Literature DB >> 23720759

mRNA on the move: the road to its biological destiny.

Carolina Eliscovich1, Adina R Buxbaum, Zachary B Katz, Robert H Singer.   

Abstract

Cells have evolved to regulate the asymmetric distribution of specific mRNA targets to institute spatial and temporal control over gene expression. Over the last few decades, evidence has mounted as to the importance of localization elements in the mRNA sequence and their respective RNA-binding proteins. Live imaging methodologies have shown mechanistic details of this phenomenon. In this minireview, we focus on the advanced biochemical and cell imaging techniques used to tweeze out the finer aspects of mechanisms of mRNA movement.

Keywords:  3′-UTR; Fluorescence; Gene Expression; In Vivo Imaging; Localization Element/Zipcode; RNA Transport; RNA-Protein Interaction; RNA-binding Proteins; mRNA; β-Actin mRNA

Mesh:

Substances:

Year:  2013        PMID: 23720759      PMCID: PMC3711302          DOI: 10.1074/jbc.R113.452094

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  100 in total

Review 1.  Cis-acting determinants of asymmetric, cytoplasmic RNA transport.

Authors:  Ashwini Jambhekar; Joseph L Derisi
Journal:  RNA       Date:  2007-05       Impact factor: 4.942

2.  Nuclear export of single native mRNA molecules observed by light sheet fluorescence microscopy.

Authors:  Jan Peter Siebrasse; Tim Kaminski; Ulrich Kubitscheck
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

3.  Using the mRNA-MS2/MS2CP-FP system to study mRNA transport during Drosophila oogenesis.

Authors:  Katsiaryna Belaya; Daniel St Johnston
Journal:  Methods Mol Biol       Date:  2011

4.  Regulation of local expression of cell adhesion and motility-related mRNAs in breast cancer cells by IMP1/ZBP1.

Authors:  Wei Gu; Zachary Katz; Bin Wu; Hye Yoon Park; Deling Li; Stanley Lin; Amber L Wells; Robert H Singer
Journal:  J Cell Sci       Date:  2012-01-20       Impact factor: 5.285

5.  Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.

Authors:  Vivek L Patel; Somdeb Mitra; Richard Harris; Adina R Buxbaum; Timothée Lionnet; Michael Brenowitz; Mark Girvin; Matthew Levy; Steven C Almo; Robert H Singer; Jeffrey A Chao
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

Review 6.  Nuclear export dynamics of RNA-protein complexes.

Authors:  David Grünwald; Robert H Singer; Michael Rout
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

7.  The Neuronal Splicing Factor Nova Co-Localizes with Target RNAs in the Dendrite.

Authors:  Claudia Racca; Alejandra Gardiol; Taesun Eom; Jernej Ule; Antoine Triller; Robert B Darnell
Journal:  Front Neural Circuits       Date:  2010-03-03       Impact factor: 3.492

8.  A'-form RNA helices are required for cytoplasmic mRNA transport in Drosophila.

Authors:  Simon L Bullock; Inbal Ringel; David Ish-Horowicz; Peter J Lukavsky
Journal:  Nat Struct Mol Biol       Date:  2010-05-16       Impact factor: 15.369

9.  Actin gene expression visualized in chicken muscle tissue culture by using in situ hybridization with a biotinated nucleotide analog.

Authors:  R H Singer; D C Ward
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

10.  The role of localization of bicoid RNA in organizing the anterior pattern of the Drosophila embryo.

Authors:  T Berleth; M Burri; G Thoma; D Bopp; S Richstein; G Frigerio; M Noll; C Nüsslein-Volhard
Journal:  EMBO J       Date:  1988-06       Impact factor: 11.598

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  32 in total

1.  Endosomal transport of septin mRNA and protein indicates local translation on endosomes and is required for correct septin filamentation.

Authors:  Sebastian Baumann; Julian König; Janine Koepke; Michael Feldbrügge
Journal:  EMBO Rep       Date:  2013-12-15       Impact factor: 8.807

2.  Miles to go (mtgo) encodes FNDC3 proteins that interact with the chaperonin subunit CCT3 and are required for NMJ branching and growth in Drosophila.

Authors:  Adeela Syed; Tamás Lukacsovich; Miles Pomeroy; A Jane Bardwell; Gentry Thomas Decker; Katrina G Waymire; Judith Purcell; Weijian Huang; James Gui; Emily M Padilla; Cindy Park; Antor Paul; Thai Bin T Pham; Yanete Rodriguez; Stephen Wei; Shane Worthge; Ronak Zebarjedi; Bing Zhang; Lee Bardwell; J Lawrence Marsh; Grant R MacGregor
Journal:  Dev Biol       Date:  2018-10-25       Impact factor: 3.582

Review 3.  Control of cell migration through mRNA localization and local translation.

Authors:  Guoning Liao; Lisa Mingle; Livingston Van De Water; Gang Liu
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-09-28       Impact factor: 9.957

4.  Imaging mRNA and protein interactions within neurons.

Authors:  Carolina Eliscovich; Shailesh M Shenoy; Robert H Singer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

Review 5.  Nervous translation, do you get the message? A review of mRNPs, mRNA-protein interactions and translational control within cells of the nervous system.

Authors:  Ross Smith; Reena Jagdish Rathod; Shalini Rajkumar; Derek Kennedy
Journal:  Cell Mol Life Sci       Date:  2014-06-22       Impact factor: 9.261

Review 6.  Illuminating RNA Biology: Tools for Imaging RNA in Live Mammalian Cells.

Authors:  Esther Braselmann; Colin Rathbun; Erin M Richards; Amy E Palmer
Journal:  Cell Chem Biol       Date:  2020-07-07       Impact factor: 8.116

Review 7.  Single-Cell and Single-Molecule Analysis of Gene Expression Regulation.

Authors:  Maria Vera; Jeetayu Biswas; Adrien Senecal; Robert H Singer; Hye Yoon Park
Journal:  Annu Rev Genet       Date:  2016-11-23       Impact factor: 16.830

8.  β-Actin mRNA interactome mapping by proximity biotinylation.

Authors:  Joyita Mukherjee; Orit Hermesh; Carolina Eliscovich; Nicolas Nalpas; Mirita Franz-Wachtel; Boris Maček; Ralf-Peter Jansen
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-12       Impact factor: 11.205

Review 9.  Mechanisms and consequences of subcellular RNA localization across diverse cell types.

Authors:  Krysta L Engel; Ankita Arora; Raeann Goering; Hei-Yong G Lo; J Matthew Taliaferro
Journal:  Traffic       Date:  2020-04-29       Impact factor: 6.215

10.  In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria.

Authors:  Anne Plochowietz; Ian Farrell; Zeev Smilansky; Barry S Cooperman; Achillefs N Kapanidis
Journal:  Nucleic Acids Res       Date:  2016-09-12       Impact factor: 16.971

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