Literature DB >> 19023694

Insights into outer membrane protein crystallization.

Simon Newstead1, Jeanette Hobbs, Davina Jordan, Elisabeth P Carpenter, So Iwata.   

Abstract

Outer membrane proteins are structurally distinct from those that reside in the inner membrane and play important roles in bacterial pathogenicity and human metabolism. X-ray crystallography studies on >40 different outer membrane proteins have revealed that the transmembrane portion of these proteins can be constructed from either beta-sheets or less commonly from alpha-helices. The most common architecture is the beta-barrel, which can be formed from either a single anti-parallel sheet, fused at both ends to form a barrel or from multiple peptide chains. Outer membrane proteins exhibit considerable rigidity and stability, making their study through x-ray crystallography particularly tractable. As the number of structures of outer membrane proteins increases a more rational approach to their crystallization can be made. Herein we analyse the crystallization data from 53 outer membrane proteins and compare the results to those obtained for inner membrane proteins. A targeted sparse matrix screen for outer membrane protein crystallization is presented based on the present analysis.

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Year:  2008        PMID: 19023694      PMCID: PMC2885437          DOI: 10.1080/09687680802526574

Source DB:  PubMed          Journal:  Mol Membr Biol        ISSN: 0968-7688            Impact factor:   2.857


  31 in total

1.  Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export.

Authors:  V Koronakis; A Sharff; E Koronakis; B Luisi; C Hughes
Journal:  Nature       Date:  2000-06-22       Impact factor: 49.962

Review 2.  Transmembrane beta-barrel proteins.

Authors:  Georg E Schulz
Journal:  Adv Protein Chem       Date:  2003

Review 3.  The expression of outer membrane proteins for crystallization.

Authors:  Michael Bannwarth; Georg E Schulz
Journal:  Biochim Biophys Acta       Date:  2003-02-17

4.  Comparison of three commercial sparse-matrix crystallization screens.

Authors:  Jong Wei Wooh; Richard D Kidd; Jennifer L Martin; Bostjan Kobe
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-03-25

5.  Data mining crystallization databases: knowledge-based approaches to optimize protein crystal screens.

Authors:  Matthew S Kimber; François Vallee; Simon Houston; Alexander Necakov; Tatiana Skarina; Elena Evdokimova; Steven Beasley; Dinesh Christendat; Alexei Savchenko; Cheryl H Arrowsmith; Masoud Vedadi; Mark Gerstein; Aled M Edwards
Journal:  Proteins       Date:  2003-06-01

Review 6.  Crystallization data mining in structural genomics: using positive and negative results to optimize protein crystallization screens.

Authors:  Rebecca Page; Raymond C Stevens
Journal:  Methods       Date:  2004-11       Impact factor: 3.608

7.  Approaching the structure of human VDAC1, a key molecule in mitochondrial cross-talk.

Authors:  Kornelius Zeth; Thomas Meins; Clemens Vonrhein
Journal:  J Bioenerg Biomembr       Date:  2008-06       Impact factor: 2.945

8.  Cell envelope and shape of Escherichia coli: multiple mutants missing the outer membrane lipoprotein and other major outer membrane proteins.

Authors:  I Sonntag; H Schwarz; Y Hirota; U Henning
Journal:  J Bacteriol       Date:  1978-10       Impact factor: 3.490

9.  Characterization of the major envelope protein from Escherichia coli. Regular arrangement on the peptidoglycan and unusual dodecyl sulfate binding.

Authors:  J P Rosenbusch
Journal:  J Biol Chem       Date:  1974-12-25       Impact factor: 5.157

10.  Three-dimensional crystals of a membrane protein complex. The photosynthetic reaction centre from Rhodopseudomonas viridis.

Authors:  H Michel
Journal:  J Mol Biol       Date:  1982-07-05       Impact factor: 5.469

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  17 in total

Review 1.  New amphiphiles for membrane protein structural biology.

Authors:  Qinghai Zhang; Houchao Tao; Wen-Xu Hong
Journal:  Methods       Date:  2011-09-20       Impact factor: 3.608

2.  Self-Assembly Behaviors of a Penta-Phenylene Maltoside and Its Application for Membrane Protein Study.

Authors:  Muhammad Ehsan; Ashwani Kumar; Jonas S Mortensen; Yang Du; Parameswaran Hariharan; Kaavya K Kumar; Betty Ha; Bernadette Byrne; Lan Guan; Brian K Kobilka; Claus J Loland; Pil Seok Chae
Journal:  Chem Asian J       Date:  2019-04-10

3.  Pendant-bearing glucose-neopentyl glycol (P-GNG) amphiphiles for membrane protein manipulation: Importance of detergent pendant chain for protein stabilization.

Authors:  Hyoung Eun Bae; Cristina Cecchetti; Yang Du; Satoshi Katsube; Jonas S Mortensen; Weijiao Huang; Shahid Rehan; Ho Jin Lee; Claus J Loland; Lan Guan; Brian K Kobilka; Bernadette Byrne; Pil Seok Chae
Journal:  Acta Biomater       Date:  2020-06-06       Impact factor: 8.947

4.  Current trends in α-helical membrane protein crystallization: an update.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Protein Sci       Date:  2012-08-10       Impact factor: 6.725

5.  New penta-saccharide-bearing tripod amphiphiles for membrane protein structure studies.

Authors:  Muhammad Ehsan; Lubna Ghani; Yang Du; Parameswaran Hariharan; Jonas S Mortensen; Orquidea Ribeiro; Hongli Hu; Georgios Skiniotis; Claus J Loland; Lan Guan; Brian K Kobilka; Bernadette Byrne; Pil Seok Chae
Journal:  Analyst       Date:  2017-10-09       Impact factor: 4.616

6.  Steroid-Based Amphiphiles for Membrane Protein Study: The Importance of Alkyl Spacers for Protein Stability.

Authors:  Muhammad Ehsan; Manabendra Das; Valerie Stern; Yang Du; Jonas S Mortensen; Parameswaran Hariharan; Bernadette Byrne; Claus J Loland; Brian K Kobilka; Lan Guan; Pil Seok Chae
Journal:  Chembiochem       Date:  2018-05-29       Impact factor: 3.164

7.  High-throughput stability screening for detergent-solubilized membrane proteins.

Authors:  Vadim Kotov; Kim Bartels; Katharina Veith; Inokentijs Josts; Udaya K Tiruttani Subhramanyam; Christian Günther; Jörg Labahn; Thomas C Marlovits; Isabel Moraes; Henning Tidow; Christian Löw; Maria M Garcia-Alai
Journal:  Sci Rep       Date:  2019-07-17       Impact factor: 4.379

8.  Hydrophobic variants of ganglio-tripod amphiphiles for membrane protein manipulation.

Authors:  Pil Seok Chae; Kyung Ho Cho; Marc J Wander; Hyoung Eun Bae; Samuel H Gellman; Philip D Laible
Journal:  Biochim Biophys Acta       Date:  2013-09-21

9.  Hydrophobic variations of N-oxide amphiphiles for membrane protein manipulation: importance of non-hydrocarbon groups in the hydrophobic portion.

Authors:  Pil Seok Chae; Aiman Sadaf; Samuel H Gellman
Journal:  Chem Asian J       Date:  2013-11-04

10.  Determination and application of empirically derived detergent phase boundaries to effectively crystallize membrane proteins.

Authors:  Mary Koszelak-Rosenblum; Adam Krol; Namrita Mozumdar; Kristin Wunsch; Adam Ferin; Eleanor Cook; Christina K Veatch; Raymond Nagel; Joseph R Luft; George T Detitta; Michael G Malkowski
Journal:  Protein Sci       Date:  2009-09       Impact factor: 6.725

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