Literature DB >> 19018703

A rate and history-preserving resampling algorithm for neural spike trains.

Matthew T Harrison1, Stuart Geman.   

Abstract

Resampling methods are popular tools for exploring the statistical structure of neural spike trains. In many applications, it is desirable to have resamples that preserve certain non-Poisson properties, like refractory periods and bursting, and that are also robust to trial-to-trial variability. Pattern jitter is a resampling technique that accomplishes this by preserving the recent spiking history of all spikes and constraining resampled spikes to remain close to their original positions. The resampled spike times are maximally random up to these constraints. Dynamic programming is used to create an efficient resampling algorithm.

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Year:  2009        PMID: 19018703      PMCID: PMC3065177          DOI: 10.1162/neco.2008.03-08-730

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  20 in total

1.  Stochastic nature of precisely timed spike patterns in visual system neuronal responses.

Authors:  M W Oram; M C Wiener; R Lestienne; B J Richmond
Journal:  J Neurophysiol       Date:  1999-06       Impact factor: 2.714

2.  Coding of visual information by precisely correlated spikes in the lateral geniculate nucleus.

Authors:  Y Dan; J M Alonso; W M Usrey; R C Reid
Journal:  Nat Neurosci       Date:  1998-10       Impact factor: 24.884

Review 3.  Searching for significance in spatio-temporal firing patterns.

Authors:  George L Gerstein
Journal:  Acta Neurobiol Exp (Wars)       Date:  2004       Impact factor: 1.579

4.  Testing for and estimating latency effects for poisson and non-poisson spike trains.

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Journal:  Neural Comput       Date:  2004-11       Impact factor: 2.026

5.  Statistical assessment of time-varying dependency between two neurons.

Authors:  Valérie Ventura; Can Cai; Robert E Kass
Journal:  J Neurophysiol       Date:  2005-10       Impact factor: 2.714

6.  Trial-to-trial variability and its effect on time-varying dependency between two neurons.

Authors:  Valérie Ventura; Can Cai; Robert E Kass
Journal:  J Neurophysiol       Date:  2005-10       Impact factor: 2.714

7.  Neurons of the cerebral cortex exhibit precise interspike timing in correspondence to behavior.

Authors:  Tomer Shmiel; Rotem Drori; Oren Shmiel; Yoram Ben-Shaul; Zoltan Nadasdy; Moshe Shemesh; Mina Teicher; Moshe Abeles
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-09       Impact factor: 11.205

8.  Slow covariations in neuronal resting potentials can lead to artefactually fast cross-correlations in their spike trains.

Authors:  C D Brody
Journal:  J Neurophysiol       Date:  1998-12       Impact factor: 2.714

9.  Precisely correlated firing in cells of the lateral geniculate nucleus.

Authors:  J M Alonso; W M Usrey; R C Reid
Journal:  Nature       Date:  1996-10-31       Impact factor: 49.962

10.  Spatiotemporal firing patterns in the frontal cortex of behaving monkeys.

Authors:  M Abeles; H Bergman; E Margalit; E Vaadia
Journal:  J Neurophysiol       Date:  1993-10       Impact factor: 2.714

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  29 in total

Review 1.  Conditional modeling and the jitter method of spike resampling.

Authors:  Asohan Amarasingham; Matthew T Harrison; Nicholas G Hatsopoulos; Stuart Geman
Journal:  J Neurophysiol       Date:  2011-10-26       Impact factor: 2.714

2.  An L₁-regularized logistic model for detecting short-term neuronal interactions.

Authors:  Mengyuan Zhao; Aaron Batista; John P Cunningham; Cynthia Chestek; Zuley Rivera-Alvidrez; Rachel Kalmar; Stephen Ryu; Krishna Shenoy; Satish Iyengar
Journal:  J Comput Neurosci       Date:  2011-10-22       Impact factor: 1.621

Review 3.  Data-driven significance estimation for precise spike correlation.

Authors:  Sonja Grün
Journal:  J Neurophysiol       Date:  2009-01-07       Impact factor: 2.714

4.  Ambiguity and nonidentifiability in the statistical analysis of neural codes.

Authors:  Asohan Amarasingham; Stuart Geman; Matthew T Harrison
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-01       Impact factor: 11.205

5.  Twitch-related and rhythmic activation of the developing cerebellar cortex.

Authors:  Greta Sokoloff; Alan M Plumeau; Didhiti Mukherjee; Mark S Blumberg
Journal:  J Neurophysiol       Date:  2015-07-08       Impact factor: 2.714

6.  Monosynaptic inference via finely-timed spikes.

Authors:  Jonathan Platkiewicz; Zachary Saccomano; Sam McKenzie; Daniel English; Asohan Amarasingham
Journal:  J Comput Neurosci       Date:  2021-01-28       Impact factor: 1.621

7.  Wakefulness suppresses retinal wave-related neural activity in visual cortex.

Authors:  Didhiti Mukherjee; Alex J Yonk; Greta Sokoloff; Mark S Blumberg
Journal:  J Neurophysiol       Date:  2017-06-14       Impact factor: 2.714

8.  Natural Firing Patterns Imply Low Sensitivity of Synaptic Plasticity to Spike Timing Compared with Firing Rate.

Authors:  Michael Graupner; Pascal Wallisch; Srdjan Ostojic
Journal:  J Neurosci       Date:  2016-11-02       Impact factor: 6.167

9.  Surrogate spike train generation through dithering in operational time.

Authors:  Sebastien Louis; George L Gerstein; Sonja Grün; Markus Diesmann
Journal:  Front Comput Neurosci       Date:  2010-09-22       Impact factor: 2.380

10.  Efficient identification of assembly neurons within massively parallel spike trains.

Authors:  Denise Berger; Christian Borgelt; Sebastien Louis; Abigail Morrison; Sonja Grün
Journal:  Comput Intell Neurosci       Date:  2009-09-29
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