Literature DB >> 15366253

Searching for significance in spatio-temporal firing patterns.

George L Gerstein1.   

Abstract

We examine a specific candidate for temporal coding of information by spike trains, the occurrence of a temporal firing pattern among some number of neurons that repeats more often than expected by chance. Methods for detection of repeating patterns have long been available, but there are no analytic methods for calculating the expected numbers of repeating patterns to enable assignment of significance to the results from the experimental data. The expected numbers can be calculated by Monte-Carlo methods by repeatedly modifying the original data spike trains. Ideally the surrogates produced by such changes should destroy all patterns and cross-correlations but preserve other aspects of the trains such as rate, interval structure etc. We present here a novel variant of the "dither surrogate" (Date et al. 1998) and use surrogates generated by this algorithm to evaluate repeating pattern significance in data recorded in monkey motor cortex during behavior. Although we can demonstrate high statistical significance for the excess repetition of some spike patterns, it is not obvious that this has physiological meaning or that such patterns are used for information transfer.

Mesh:

Year:  2004        PMID: 15366253

Source DB:  PubMed          Journal:  Acta Neurobiol Exp (Wars)        ISSN: 0065-1400            Impact factor:   1.579


  15 in total

Review 1.  Conditional modeling and the jitter method of spike resampling.

Authors:  Asohan Amarasingham; Matthew T Harrison; Nicholas G Hatsopoulos; Stuart Geman
Journal:  J Neurophysiol       Date:  2011-10-26       Impact factor: 2.714

2.  Maximum decoding abilities of temporal patterns and synchronized firings: application to auditory neurons responding to click trains and amplitude modulated white noise.

Authors:  Boris Gourévitch; Jos J Eggermont
Journal:  J Comput Neurosci       Date:  2009-04-17       Impact factor: 1.621

3.  Detecting synfire chain activity using massively parallel spike train recording.

Authors:  Sven Schrader; Sonja Grün; Markus Diesmann; George L Gerstein
Journal:  J Neurophysiol       Date:  2008-07-16       Impact factor: 2.714

Review 4.  Data-driven significance estimation for precise spike correlation.

Authors:  Sonja Grün
Journal:  J Neurophysiol       Date:  2009-01-07       Impact factor: 2.714

5.  A rate and history-preserving resampling algorithm for neural spike trains.

Authors:  Matthew T Harrison; Stuart Geman
Journal:  Neural Comput       Date:  2009-05       Impact factor: 2.026

6.  Testing a neural coding hypothesis using surrogate data.

Authors:  Yoshito Hirata; Yuichi Katori; Hidetoshi Shimokawa; Hideyuki Suzuki; Timothy A Blenkinsop; Eric J Lang; Kazuyuki Aihara
Journal:  J Neurosci Methods       Date:  2008-05-15       Impact factor: 2.390

7.  Surrogate spike train generation through dithering in operational time.

Authors:  Sebastien Louis; George L Gerstein; Sonja Grün; Markus Diesmann
Journal:  Front Comput Neurosci       Date:  2010-09-22       Impact factor: 2.380

8.  Quantifying neural coding of event timing.

Authors:  Demetris S Soteropoulos; Stuart N Baker
Journal:  J Neurophysiol       Date:  2008-11-19       Impact factor: 2.714

9.  Chaos game representation of human pallidal spike trains.

Authors:  Mahta Rasouli; Golta Rasouli; Fredrick A Lenz; Donald S Borrett; Leo Verhagen; Hon C Kwan
Journal:  J Biol Phys       Date:  2009-08-18       Impact factor: 1.365

10.  Finding neural assemblies with frequent item set mining.

Authors:  David Picado-Muiño; Christian Borgelt; Denise Berger; George Gerstein; Sonja Grün
Journal:  Front Neuroinform       Date:  2013-05-31       Impact factor: 4.081

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