Literature DB >> 33507429

Monosynaptic inference via finely-timed spikes.

Jonathan Platkiewicz1, Zachary Saccomano2, Sam McKenzie3, Daniel English4, Asohan Amarasingham5,6,7.   

Abstract

Observations of finely-timed spike relationships in population recordings have been used to support partial reconstruction of neural microcircuit diagrams. In this approach, fine-timescale components of paired spike train interactions are isolated and subsequently attributed to synaptic parameters. Recent perturbation studies strengthen the case for such an inference, yet the complete set of measurements needed to calibrate statistical models is unavailable. To address this gap, we study features of pairwise spiking in a large-scale in vivo dataset where presynaptic neurons were explicitly decoupled from network activity by juxtacellular stimulation. We then construct biophysical models of paired spike trains to reproduce the observed phenomenology of in vivo monosynaptic interactions, including both fine-timescale spike-spike correlations and firing irregularity. A key characteristic of these models is that the paired neurons are coupled by rapidly-fluctuating background inputs. We quantify a monosynapse's causal effect by comparing the postsynaptic train with its counterfactual, when the monosynapse is removed. Subsequently, we develop statistical techniques for estimating this causal effect from the pre- and post-synaptic spike trains. A particular focus is the justification and application of a nonparametric separation of timescale principle to implement synaptic inference. Using simulated data generated from the biophysical models, we characterize the regimes in which the estimators accurately identify the monosynaptic effect. A secondary goal is to initiate a critical exploration of neurostatistical assumptions in terms of biophysical mechanisms, particularly with regards to the challenging but arguably fundamental issue of fast, unobservable nonstationarities in background dynamics.

Keywords:  Integrate-and-fire neuron; Noise models; Nonstationarity; Spike correlogram; Synaptic connectivity; Synchrony

Year:  2021        PMID: 33507429     DOI: 10.1007/s10827-020-00770-5

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  61 in total

1.  Correlations without synchrony

Authors: 
Journal:  Neural Comput       Date:  1999-10-01       Impact factor: 2.026

2.  Effects of synaptic noise and filtering on the frequency response of spiking neurons.

Authors:  N Brunel; F S Chance; N Fourcaud; L F Abbott
Journal:  Phys Rev Lett       Date:  2001-03-05       Impact factor: 9.161

3.  Adaptive coincidence detection and dynamic gain control in visual cortical neurons in vivo.

Authors:  Rony Azouz; Charles M Gray
Journal:  Neuron       Date:  2003-02-06       Impact factor: 17.173

Review 4.  Conditional modeling and the jitter method of spike resampling.

Authors:  Asohan Amarasingham; Matthew T Harrison; Nicholas G Hatsopoulos; Stuart Geman
Journal:  J Neurophysiol       Date:  2011-10-26       Impact factor: 2.714

5.  Spike count reliability and the Poisson hypothesis.

Authors:  Asohan Amarasingham; Ting-Li Chen; Stuart Geman; Matthew T Harrison; David L Sheinberg
Journal:  J Neurosci       Date:  2006-01-18       Impact factor: 6.167

Review 6.  Techniques for extracting single-trial activity patterns from large-scale neural recordings.

Authors:  Mark M Churchland; Byron M Yu; Maneesh Sahani; Krishna V Shenoy
Journal:  Curr Opin Neurobiol       Date:  2007-10       Impact factor: 6.627

7.  Two layers of neural variability.

Authors:  Mark M Churchland; L F Abbott
Journal:  Nat Neurosci       Date:  2012-11       Impact factor: 24.884

Review 8.  Feed-forward inhibition in the hippocampal formation.

Authors:  G Buzsáki
Journal:  Prog Neurobiol       Date:  1984       Impact factor: 11.685

9.  Evaluation of neuronal connectivity: sensitivity of cross-correlation.

Authors:  A M Aertsen; G L Gerstein
Journal:  Brain Res       Date:  1985-08-12       Impact factor: 3.252

10.  Functional organization of excitatory synaptic strength in primary visual cortex.

Authors:  Lee Cossell; Maria Florencia Iacaruso; Dylan R Muir; Rachael Houlton; Elie N Sader; Ho Ko; Sonja B Hofer; Thomas D Mrsic-Flogel
Journal:  Nature       Date:  2015-02-04       Impact factor: 49.962

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  1 in total

1.  A convolutional neural network for estimating synaptic connectivity from spike trains.

Authors:  Daisuke Endo; Ryota Kobayashi; Ramon Bartolo; Bruno B Averbeck; Yasuko Sugase-Miyamoto; Kazuko Hayashi; Kenji Kawano; Barry J Richmond; Shigeru Shinomoto
Journal:  Sci Rep       Date:  2021-06-08       Impact factor: 4.379

  1 in total

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