Literature DB >> 19015032

Structure and dynamics of single DNA molecules manipulated by magnetic tweezers and or flow.

Sanford H Leuba1, Travis B Wheeler, Chao-Min Cheng, Philip R LeDuc, Mónica Fernández-Sierra, Edwin Quiñones.   

Abstract

Here we describe the use of magnetic tweezers and or microfluidics to manipulate single DNA molecules. We describe experiment which employ magnetic tweezers coupled to an inverted microscope as well as the use of a magnetic tweezers setup with an upright microscope. Using a chamber prepared via soft lithography, we also describe a microfluidic device for the manipulation of individual DNA molecules. Finally, we present some past successful examples of using these approaches to elucidate unique information about protein-nucleic acid interactions.

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Year:  2008        PMID: 19015032      PMCID: PMC2763319          DOI: 10.1016/j.ymeth.2008.10.022

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  27 in total

1.  Fast kinetics of chromatin assembly revealed by single-molecule videomicroscopy and scanning force microscopy.

Authors:  B Ladoux; J P Quivy; P Doyle; O du Roure; G Almouzni; J L Viovy
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Magnetic tweezers: micromanipulation and force measurement at the molecular level.

Authors:  Charlie Gosse; Vincent Croquette
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

3.  The enzymatic basis of processivity in lambda exonuclease.

Authors:  Krithika Subramanian; Wiriya Rutvisuttinunt; Walter Scott; Richard S Myers
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

4.  Assembly of single chromatin fibers depends on the tension in the DNA molecule: magnetic tweezers study.

Authors:  Sanford H Leuba; Mikhail A Karymov; Miroslav Tomschik; Ravi Ramjit; Paul Smith; Jordanka Zlatanova
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-09       Impact factor: 11.205

Review 5.  Magnetic tweezers: a sensitive tool to study DNA and chromatin at the single-molecule level.

Authors:  Jordanka Zlatanova; Sanford H Leuba
Journal:  Biochem Cell Biol       Date:  2003-06       Impact factor: 3.626

6.  From the Cover: The dynamics of genomic-length DNA molecules in 100-nm channels.

Authors:  Jonas O Tegenfeldt; Christelle Prinz; Han Cao; Steven Chou; Walter W Reisner; Robert Riehn; Yan Mei Wang; Edward C Cox; James C Sturm; Pascal Silberzan; Robert H Austin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-13       Impact factor: 11.205

Review 7.  Single-molecule analysis of chromatin.

Authors:  Sanford H Leuba; Martin L Bennink; Jordanka Zlatanova
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

8.  Sequence-dependent pausing of single lambda exonuclease molecules.

Authors:  Thomas T Perkins; Ravindra V Dalal; Paul G Mitsis; Steven M Block
Journal:  Science       Date:  2003-08-28       Impact factor: 47.728

9.  Laminar flow cells for single-molecule studies of DNA-protein interactions.

Authors:  Laurence R Brewer; Piero R Bianco
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

10.  Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder.

Authors:  Antoine M van Oijen; Paul C Blainey; Donald J Crampton; Charles C Richardson; Tom Ellenberger; X Sunney Xie
Journal:  Science       Date:  2003-08-29       Impact factor: 47.728

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  1 in total

1.  A method to estimate the elastic energy stored in braided DNA molecules using hydrodynamic equations.

Authors:  Mónica Fernández-Sierra; Violeta Delgado-Martí; Jorge E Colón-García; Edwin Quiñones
Journal:  Chem Phys       Date:  2011-05-26       Impact factor: 2.348

  1 in total

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