Literature DB >> 12897848

Magnetic tweezers: a sensitive tool to study DNA and chromatin at the single-molecule level.

Jordanka Zlatanova1, Sanford H Leuba.   

Abstract

The advent of single-molecule biology has allowed unprecedented insight into the dynamic behavior of biological macromolecules and their complexes. Unexpected properties, masked by the asynchronous behavior of myriads of molecules in bulk experiments, can be revealed; equally importantly, individual members of a molecular population often exhibit distinct features in their properties. Finally, the single-molecule approaches allow us to study the behavior of biological macromolecules under applied tension or torsion; understanding the mechanical properties of these molecules helps us understand how they function in the cell. In this review, we summarize the application of magnetic tweezers (MT) to the study of DNA behavior at the single-molecule level. MT can be conveniently used to stretch DNA and introduce controlled levels of superhelicity into the molecule and to follow to a high definition the action of different types of topoisomerases. Its potential for chromatin studies is also enormous, and we will briefly present our first chromatin results.

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Year:  2003        PMID: 12897848     DOI: 10.1139/o03-048

Source DB:  PubMed          Journal:  Biochem Cell Biol        ISSN: 0829-8211            Impact factor:   3.626


  13 in total

1.  Homebuilt single-molecule scanning confocal fluorescence microscope studies of single DNA/protein interactions.

Authors:  Haocheng Zheng; Lori S Goldner; Sanford H Leuba
Journal:  Methods       Date:  2007-03       Impact factor: 3.608

2.  Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results.

Authors:  Jin-Der Wen; Maria Manosas; Pan T X Li; Steven B Smith; Carlos Bustamante; Felix Ritort; Ignacio Tinoco
Journal:  Biophys J       Date:  2007-02-09       Impact factor: 4.033

3.  Subpiconewton dynamic force spectroscopy using magnetic tweezers.

Authors:  M Kruithof; F Chien; M de Jager; J van Noort
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

4.  Nucleosome assembly depends on the torsion in the DNA molecule: a magnetic tweezers study.

Authors:  Pooja Gupta; Jordanka Zlatanova; Miroslav Tomschik
Journal:  Biophys J       Date:  2009-12-16       Impact factor: 4.033

Review 5.  Expedient placement of two fluorescent dyes for investigating dynamic DNA protein interactions in real time.

Authors:  Sanford H Leuba; Syam P Anand; Joel M Harp; Saleem A Khan
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

Review 6.  The importance of surfaces in single-molecule bioscience.

Authors:  Mari-Liis Visnapuu; Daniel Duzdevich; Eric C Greene
Journal:  Mol Biosyst       Date:  2008-03-19

Review 7.  Force probing of individual molecules inside the living cell is now a reality.

Authors:  Lene B Oddershede
Journal:  Nat Chem Biol       Date:  2012-11       Impact factor: 15.040

8.  Design and Modeling of a 3-D Magnetic Actuator for Magnetic Microbead Manipulation.

Authors:  Zhipeng Zhang; Chia-Hsiang Menq
Journal:  IEEE ASME Trans Mechatron       Date:  2011-06-01       Impact factor: 5.303

Review 9.  EcoR124I: from plasmid-encoded restriction-modification system to nanodevice.

Authors:  James Youell; Keith Firman
Journal:  Microbiol Mol Biol Rev       Date:  2008-06       Impact factor: 11.056

Review 10.  Towards single biomolecule handling and characterization by MEMS.

Authors:  Hideyuki F Arata; Momoko Kumemura; Naoyoshi Sakaki; Hiroyuki Fujita
Journal:  Anal Bioanal Chem       Date:  2008-03-25       Impact factor: 4.142

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