Literature DB >> 21765578

A method to estimate the elastic energy stored in braided DNA molecules using hydrodynamic equations.

Mónica Fernández-Sierra1, Violeta Delgado-Martí, Jorge E Colón-García, Edwin Quiñones.   

Abstract

We present a single-molecule method for measuring the torque exerted by braided DNA molecules undergoing spontaneous unbraiding while attached to a paramagnetic dumbbell in the absence of external manipulation. A magnetic tweezers setup is employed to braid pairs of lambda DNA molecules covalently bound to a surface. Upon removing the magnetic field, the braided DNA molecules undergo spontaneous unbraiding, efficiently transforming the stored elastic energy into enough mechanical energy to rotate the tethered dumbbells for periods as long as 30 minutes. Using hydrodynamic equations we estimate the torque exerted on the dumbbells by the DNA braids, yielding values ranging from 47 to 166 pN nm.

Entities:  

Year:  2011        PMID: 21765578      PMCID: PMC3133659          DOI: 10.1016/j.chemphys.2011.04.007

Source DB:  PubMed          Journal:  Chem Phys        ISSN: 0301-0104            Impact factor:   2.348


  25 in total

1.  Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases.

Authors:  G Charvin; D Bensimon; V Croquette
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-05       Impact factor: 11.205

2.  Of torques, forces, and protein machines.

Authors:  Carlos Bustamante
Journal:  Protein Sci       Date:  2004-11       Impact factor: 6.725

3.  Braiding DNA: experiments, simulations, and models.

Authors:  G Charvin; A Vologodskii; D Bensimon; V Croquette
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

Review 4.  DNA supercoiling and bacterial gene expression.

Authors:  Charles J Dorman
Journal:  Sci Prog       Date:  2006       Impact factor: 2.774

5.  Energy landscape for DNA rotation and sliding through a phage portal.

Authors:  Jeremiah Nummela; Ioan Andricioaei
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

6.  Influence of internal capsid pressure on viral infection by phage lambda.

Authors:  Sarah Köster; Alex Evilevitch; Meerim Jeembaeva; David A Weitz
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

7.  Behavior of supercoiled DNA.

Authors:  T R Strick; J F Allemand; D Bensimon; V Croquette
Journal:  Biophys J       Date:  1998-04       Impact factor: 4.033

Review 8.  DNA gyrase: structure and function.

Authors:  R J Reece; A Maxwell
Journal:  Crit Rev Biochem Mol Biol       Date:  1991       Impact factor: 8.250

Review 9.  Structure and dynamics of single DNA molecules manipulated by magnetic tweezers and or flow.

Authors:  Sanford H Leuba; Travis B Wheeler; Chao-Min Cheng; Philip R LeDuc; Mónica Fernández-Sierra; Edwin Quiñones
Journal:  Methods       Date:  2008-11-17       Impact factor: 3.608

10.  Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torque.

Authors:  Marcelo Nöllmann; Michael D Stone; Zev Bryant; Jeff Gore; Nancy J Crisona; Seok-Cheol Hong; Sylvain Mitelheiser; Anthony Maxwell; Carlos Bustamante; Nicholas R Cozzarelli
Journal:  Nat Struct Mol Biol       Date:  2007-03-04       Impact factor: 15.369

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