Literature DB >> 19002654

Detection and assignment of phosphoserine and phosphothreonine residues by (13)C- (31)P spin-echo difference NMR spectroscopy.

Lawrence P McIntosh1, Hyun-Seo Kang, Mark Okon, Mary L Nelson, Barbara J Graves, Bernhard Brutscher.   

Abstract

A simple NMR method is presented for the identification and assignment of phosphorylated serine and threonine residues in (13)C- or (13)C/(15)N-labeled proteins. By exploiting modest (~5 Hz) 2- and 3-bond (13)C-(31)P scalar couplings, the aliphatic (1)H-(13)C signals from phosphoserines and phosphothreonines can be detected selectively in a (31)P spin-echo difference constant time (1)H-(13)C HSQC spectrum. Inclusion of the same (31)P spin-echo element within the (13)C frequency editing period of an intraHNCA or HN(CO)CA experiment allows identification of the amide (1)H(N) and (15)N signals of residues (i) for which( 13)C(alpha)(i) or ( 13)C(alpha)(i - 1), respectively, are coupled to a phosphate. Furthermore, (31)P resonance assignments can be obtained by applying selective low power cw (31)P decoupling during the spin-echo period. The approach is demonstrated using a PNT domain containing fragment of the transcription factor Ets-1, phosphorylated in vitro at Thr38 and Ser41 with the MAP kinase ERK2.

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Year:  2008        PMID: 19002654     DOI: 10.1007/s10858-008-9287-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  23 in total

1.  The 2D [31P] spin-echo-difference constant-time [13C, 1H]-HMQC experiment for simultaneous determination of 3J(H3'P) and 3J(C4'P) in 13C-labeled nucleic acids and their protein complexes.

Authors:  T Szyperski; C Fernández; A Ono; K Wüthrich; M Kainosho
Journal:  J Magn Reson       Date:  1999-10       Impact factor: 2.229

2.  Intraresidue HNCA and COHNCA experiments for protein backbone resonance assignment.

Authors:  Bernhard Brutscher
Journal:  J Magn Reson       Date:  2002-05       Impact factor: 2.229

Review 3.  Recent developments in mass spectrometry-based quantitative phosphoproteomics.

Authors:  Jeffrey C Smith; Daniel Figeys
Journal:  Biochem Cell Biol       Date:  2008-04       Impact factor: 3.626

4.  Recommendations for the presentation of NMR structures of proteins and nucleic acids--IUPAC-IUBMB-IUPAB Inter-Union Task Group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy.

Authors:  J L Markley; A Bax; Y Arata; C W Hilbers; R Kaptein; B D Sykes; P E Wright; K Wüthrich
Journal:  Eur J Biochem       Date:  1998-08-15

5.  Visualization of the phosphorylated active site loop of the cytoplasmic B domain of the mannitol transporter II(Mannitol) of the Escherichia coli phosphotransferase system by NMR spectroscopy and residual dipolar couplings.

Authors:  Jeong-Yong Suh; Chun Tang; Mengli Cai; G Marius Clore
Journal:  J Mol Biol       Date:  2005-09-28       Impact factor: 5.469

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 7.  Measurement of homo- and heteronuclear J couplings from quantitative J correlation.

Authors:  A Bax; G W Vuister; S Grzesiek; F Delaglio; A C Wang; R Tschudin; G Zhu
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

8.  Random-coil chemical shifts of phosphorylated amino acids.

Authors:  E A Bienkiewicz; K J Lumb
Journal:  J Biomol NMR       Date:  1999-11       Impact factor: 2.835

9.  Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

Authors:  Jesper V Olsen; Blagoy Blagoev; Florian Gnad; Boris Macek; Chanchal Kumar; Peter Mortensen; Matthias Mann
Journal:  Cell       Date:  2006-11-03       Impact factor: 41.582

10.  Ras/mitogen-activated protein kinase signaling activates Ets-1 and Ets-2 by CBP/p300 recruitment.

Authors:  Charles E Foulds; Mary L Nelson; Adam G Blaszczak; Barbara J Graves
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

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  6 in total

1.  Ras signaling requires dynamic properties of Ets1 for phosphorylation-enhanced binding to coactivator CBP.

Authors:  Mary L Nelson; Hyun-Seo Kang; Gregory M Lee; Adam G Blaszczak; Desmond K W Lau; Lawrence P McIntosh; Barbara J Graves
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-13       Impact factor: 11.205

2.  BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins.

Authors:  Zsofia Solyom; Melanie Schwarten; Leonhard Geist; Robert Konrat; Dieter Willbold; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2013-02-24       Impact factor: 2.835

3.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

4.  The PNT domain from Drosophila pointed-P2 contains a dynamic N-terminal helix preceded by a disordered phosphoacceptor sequence.

Authors:  Desmond K W Lau; Mark Okon; Lawrence P McIntosh
Journal:  Protein Sci       Date:  2012-10-09       Impact factor: 6.725

Review 5.  Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy.

Authors:  Ajith Kumar; Vaishali Narayanan; Ashok Sekhar
Journal:  Biochemistry       Date:  2019-11-04       Impact factor: 3.162

6.  OGlcNAcylation and phosphorylation have similar structural effects in α-helices: post-translational modifications as inducible start and stop signals in α-helices, with greater structural effects on threonine modification.

Authors:  Michael B Elbaum; Neal J Zondlo
Journal:  Biochemistry       Date:  2014-04-03       Impact factor: 3.162

  6 in total

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