Literature DB >> 23435576

BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins.

Zsofia Solyom1, Melanie Schwarten, Leonhard Geist, Robert Konrat, Dieter Willbold, Bernhard Brutscher.   

Abstract

The characterization of the conformational properties of intrinsically disordered proteins (IDPs), and their interaction modes with physiological partners has recently become a major research topic for understanding biological function on the molecular level. Although multidimensional NMR spectroscopy is the technique of choice for the study of IDPs at atomic resolution, the intrinsically low resolution, and the large peak intensity variations often observed in NMR spectra of IDPs call for resolution- and sensitivity-optimized pulse schemes. We present here a set of amide proton-detected 3D BEST-TROSY correlation experiments that yield the required sensitivity and spectral resolution for time-efficient sequential resonance assignment of large IDPs. In addition, we introduce two proline-edited 2D experiments that allow unambiguous identification of residues adjacent to proline that is one of the most abundant amino acids in IDPs. The performance of these experiments, and the advantages of BEST-TROSY pulse schemes are discussed and illustrated for two IDPs of similar length (~270 residues) but with different conformational sampling properties.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23435576     DOI: 10.1007/s10858-013-9715-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  29 in total

Review 1.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

Review 2.  Viral disorder or disordered viruses: do viral proteins possess unique features?

Authors:  Bin Xue; Robert W Williams; Christopher J Oldfield; Gerard Kian-Meng Goh; A K Dunker; Vladimir N Uversky
Journal:  Protein Pept Lett       Date:  2010-08       Impact factor: 1.890

3.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-01       Impact factor: 2.835

Review 4.  Understanding protein non-folding.

Authors:  Vladimir N Uversky; A Keith Dunker
Journal:  Biochim Biophys Acta       Date:  2010-02-01

Review 5.  Recent advances in solution NMR: fast methods and heteronuclear direct detection.

Authors:  Isabella C Felli; Bernhard Brutscher
Journal:  Chemphyschem       Date:  2009-07-13       Impact factor: 3.102

6.  BEST-HNN and 2D-(HN)NH experiments for rapid backbone assignment in proteins.

Authors:  Dinesh Kumar; Subhradip Paul; Ramakrishna V Hosur
Journal:  J Magn Reson       Date:  2010-02-20       Impact factor: 2.229

Review 7.  Intrinsically disordered protein.

Authors:  A K Dunker; J D Lawson; C J Brown; R M Williams; P Romero; J S Oh; C J Oldfield; A M Campen; C M Ratliff; K W Hipps; J Ausio; M S Nissen; R Reeves; C Kang; C R Kissinger; R W Bailey; M D Griswold; W Chiu; E C Garner; Z Obradovic
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

8.  Longitudinal-relaxation-enhanced NMR experiments for the study of nucleic acids in solution.

Authors:  Jonathan Farjon; Jérôme Boisbouvier; Paul Schanda; Arthur Pardi; Jean-Pierre Simorre; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2009-06-24       Impact factor: 15.419

9.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

10.  Transient structure and SH3 interaction sites in an intrinsically disordered fragment of the hepatitis C virus protein NS5A.

Authors:  Sophie Feuerstein; Zsofia Solyom; Amine Aladag; Adrien Favier; Melanie Schwarten; Silke Hoffmann; Dieter Willbold; Bernhard Brutscher
Journal:  J Mol Biol       Date:  2012-04-26       Impact factor: 5.469

View more
  83 in total

1.  HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

Authors:  Christoph Wiedemann; Nishit Goradia; Sabine Häfner; Christian Herbst; Matthias Görlach; Oliver Ohlenschläger; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

2.  Role of protein dynamics in ion selectivity and allosteric coupling in the NaK channel.

Authors:  Joshua B Brettmann; Darya Urusova; Marco Tonelli; Jonathan R Silva; Katherine A Henzler-Wildman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

3.  Fragment-Based NMR Study of the Conformational Dynamics in the bHLH Transcription Factor Ascl1.

Authors:  Lorenzo Baronti; Tomáš Hošek; Sergio Gil-Caballero; Hadas Raveh-Amit; Eduardo O Calçada; Isabel Ayala; András Dinnyés; Isabella C Felli; Roberta Pierattelli; Bernhard Brutscher
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

4.  High-dimensionality 13C direct-detected NMR experiments for the automatic assignment of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2013-11-08       Impact factor: 2.835

5.  Taking Simultaneous Snapshots of Intrinsically Disordered Proteins in Action.

Authors:  Marco Schiavina; Maria Grazia Murrali; Letizia Pontoriero; Valerio Sainati; Rainer Kümmerle; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  Biophys J       Date:  2019-05-23       Impact factor: 4.033

6.  Pyroglutamate-Modified Amyloid-β(3-42) Shows α-Helical Intermediates before Amyloid Formation.

Authors:  Christina Dammers; Kerstin Reiss; Lothar Gremer; Justin Lecher; Tamar Ziehm; Matthias Stoldt; Melanie Schwarten; Dieter Willbold
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

7.  HNCA+, HNCO+, and HNCACB+ experiments: improved performance by simultaneous detection of orthogonal coherence transfer pathways.

Authors:  Sergio Gil-Caballero; Adrien Favier; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2014-07-24       Impact factor: 2.835

8.  Alternative conformations of the Tau repeat domain in complex with an engineered binding protein.

Authors:  Clara S R Grüning; Ewa A Mirecka; Antonia N Klein; Eckhard Mandelkow; Dieter Willbold; Stephen F Marino; Matthias Stoldt; Wolfgang Hoyer
Journal:  J Biol Chem       Date:  2014-06-25       Impact factor: 5.157

9.  New 13C-detected experiments for the assignment of intrinsically disordered proteins.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Biomol NMR       Date:  2014-04-04       Impact factor: 2.835

10.  TGIF1 homeodomain interacts with Smad MH1 domain and represses TGF-β signaling.

Authors:  Ewelina Guca; David Suñol; Lidia Ruiz; Agnieszka Konkol; Jorge Cordero; Carles Torner; Eric Aragon; Pau Martin-Malpartida; Antoni Riera; Maria J Macias
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.