Literature DB >> 18988744

Paramagnetic shifts in solid-state NMR of proteins to elicit structural information.

Stéphane Balayssac1, Ivano Bertini, Anusarka Bhaumik, Moreno Lelli, Claudio Luchinat.   

Abstract

The recent observation of pseudocontact shifts (pcs) in (13)C high-resolution solid-state NMR of paramagnetic proteins opens the way to their application as structural restraints. Here, by investigating a microcrystalline sample of cobalt(II)-substituted matrix metalloproteinase 12 [CoMMP-12 (159 AA, 17.5 kDa)], it is shown that a combined strategy of protein labeling and dilution of the paramagnetic species (i.e., (13)C-,(15)N-labeled CoMMP-12 diluted in unlabeled ZnMMP-12, and (13)C-,(15)N-labeled ZnMMP-12 diluted in unlabeled CoMMP-12) allows one to easily separate the pcs contributions originated from the protein internal metal (intramolecular pcs) from those due to the metals in neighboring proteins in the crystal lattice (intermolecular pcs) and that both can be used for structural purposes. It is demonstrated that intramolecular pcs are significant structural restraints helpful in increasing both precision and accuracy of the structure, which is a need in solid-state structural biology nowadays. Furthermore, intermolecular pcs provide unique information on positions and orientations of neighboring protein molecules in the solid phase.

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Year:  2008        PMID: 18988744      PMCID: PMC2582317          DOI: 10.1073/pnas.0708460105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

2.  Experimentally exploring the conformational space sampled by domain reorientation in calmodulin.

Authors:  Ivano Bertini; Cristina Del Bianco; Ioannis Gelis; Nikolaus Katsaros; Claudio Luchinat; Giacomo Parigi; Massimiliano Peana; Alessandro Provenzani; Maria Antonietta Zoroddu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-20       Impact factor: 11.205

3.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

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Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

4.  Paramagnetic ions provide structural restraints in solid-state NMR of proteins.

Authors:  Stéphane Balayssac; Ivano Bertini; Moreno Lelli; Claudio Luchinat; Massimiliano Maletta
Journal:  J Am Chem Soc       Date:  2007-02-01       Impact factor: 15.419

Review 5.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

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Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  Correlation of structural elements and infectivity of the HET-s prion.

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Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

8.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

9.  13C-13C rotational resonance width distance measurements in uniformly 13C-labeled peptides.

Authors:  Ramesh Ramachandran; Vladimir Ladizhansky; Vikram S Bajaj; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2003-12-17       Impact factor: 15.419

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Journal:  PLoS One       Date:  2008-06-04       Impact factor: 3.240

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  25 in total

1.  Structure and backbone dynamics of a microcrystalline metalloprotein by solid-state NMR.

Authors:  Michael J Knight; Andrew J Pell; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Roberta Pierattelli; Torsten Herrmann; Lyndon Emsley; Guido Pintacuda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-21       Impact factor: 11.205

2.  Information content of long-range NMR data for the characterization of conformational heterogeneity.

Authors:  Witold Andrałojć; Konstantin Berlin; David Fushman; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Luca Sgheri
Journal:  J Biomol NMR       Date:  2015-06-05       Impact factor: 2.835

3.  A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions.

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Journal:  J Biomol NMR       Date:  2016-10-22       Impact factor: 2.835

4.  Restraints on backbone conformations in solid state NMR studies of uniformly labeled proteins from quantitative amide 15N-15N and carbonyl 13C-13C dipolar recoupling data.

Authors:  Kan-Nian Hu; Wei Qiang; Guillermo A Bermejo; Charles D Schwieters; Robert Tycko
Journal:  J Magn Reson       Date:  2012-03-09       Impact factor: 2.229

5.  Solid state NMR chemical shift assignment and conformational analysis of a cellulose binding protein facilitated by optimized glycerol enrichment.

Authors:  Hadar Ivanir; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2014-05-14       Impact factor: 2.835

6.  Sparse (13)C labelling for solid-state NMR studies of P. pastoris expressed eukaryotic seven-transmembrane proteins.

Authors:  Jing Liu; Chang Liu; Ying Fan; Rachel A Munro; Vladimir Ladizhansky; Leonid S Brown; Shenlin Wang
Journal:  J Biomol NMR       Date:  2016-04-27       Impact factor: 2.835

Review 7.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

8.  Molecular-level examination of Cu2+ binding structure for amyloid fibrils of 40-residue Alzheimer's β by solid-state NMR spectroscopy.

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Journal:  J Am Chem Soc       Date:  2011-02-22       Impact factor: 15.419

9.  Solid-state NMR and membrane proteins.

Authors:  Stanley J Opella
Journal:  J Magn Reson       Date:  2014-12-29       Impact factor: 2.229

10.  Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA.

Authors:  Lindsay J Sperling; Deborah A Berthold; Terry L Sasser; Victoria Jeisy-Scott; Chad M Rienstra
Journal:  J Mol Biol       Date:  2010-04-13       Impact factor: 5.469

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