Literature DB >> 18971632

Control of mRNA decapping by Dcp2: An open and shut case?

Stephen N Floor1, Brittnee N Jones, John D Gross.   

Abstract

mRNA decapping by Dcp2 is a critical step in several major eukaryotic mRNA decay pathways. Dcp2 forms the catalytic core of a mRNP that is configured for processing diverse substrates by pathway-specific activators. Here we elaborate a model of catalysis by Dcp2 which posits that activity is controlled by a conformational equilibrium between an open, inactive and closed, active form of the enzyme. Structural studies on yeast Dcp2 indicate that the general activator Dcp1 and substrate promote the closed form of the enzyme. Kinetic studies indicate the catalytic step of decapping is rate-limiting and accelerated by Dcp1. We propose that regulation of conformational transitions in Dcp2 during a rate-limiting step after assembly of the decapping mRNP provides a checkpoint for determining if an mRNA is degraded or recycled to translation.

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Year:  2008        PMID: 18971632      PMCID: PMC2699264          DOI: 10.4161/rna.6859

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  40 in total

1.  The structure of ADP-ribose pyrophosphatase reveals the structural basis for the versatility of the Nudix family.

Authors:  S B Gabelli; M A Bianchet; M J Bessman; L M Amzel
Journal:  Nat Struct Biol       Date:  2001-05

2.  Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping.

Authors:  Guy R Pilkington; Roy Parker
Journal:  Mol Cell Biol       Date:  2007-12-17       Impact factor: 4.272

3.  Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing.

Authors:  Ana Eulalio; Jan Rehwinkel; Mona Stricker; Eric Huntzinger; Schu-Fee Yang; Tobias Doerks; Silke Dorner; Peer Bork; Michael Boutros; Elisa Izaurralde
Journal:  Genes Dev       Date:  2007-09-27       Impact factor: 11.361

4.  mRNA decapping is promoted by an RNA-binding channel in Dcp2.

Authors:  Mandar V Deshmukh; Brittnee N Jones; Duc-Uy Quang-Dang; Jeremy Flinders; Stephen N Floor; Candice Kim; Jacek Jemielity; Marcin Kalek; Edward Darzynkiewicz; John D Gross
Journal:  Mol Cell       Date:  2008-02-15       Impact factor: 17.970

Review 5.  P bodies and the control of mRNA translation and degradation.

Authors:  Roy Parker; Ujwal Sheth
Journal:  Mol Cell       Date:  2007-03-09       Impact factor: 17.970

6.  Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development.

Authors:  Jun Xu; Jun-Yi Yang; Qi-Wen Niu; Nam-Hai Chua
Journal:  Plant Cell       Date:  2006-12-08       Impact factor: 11.277

7.  Mechanism of the Escherichia coli ADP-ribose pyrophosphatase, a Nudix hydrolase.

Authors:  Sandra B Gabelli; Mario A Bianchet; Yuki Ohnishi; Yoshi Ichikawa; Maurice J Bessman; L Mario Amzel
Journal:  Biochemistry       Date:  2002-07-30       Impact factor: 3.162

8.  Analysis of P-body assembly in Saccharomyces cerevisiae.

Authors:  Daniela Teixeira; Roy Parker
Journal:  Mol Biol Cell       Date:  2007-04-11       Impact factor: 4.138

9.  Structural basis of dcp2 recognition and activation by dcp1.

Authors:  Meipei She; Carolyn J Decker; Dmitri I Svergun; Adam Round; Nan Chen; Denise Muhlrad; Roy Parker; Haiwei Song
Journal:  Mol Cell       Date:  2008-02-15       Impact factor: 17.970

10.  Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae.

Authors:  Carolyn J Decker; Daniela Teixeira; Roy Parker
Journal:  J Cell Biol       Date:  2007-11-05       Impact factor: 10.539

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  6 in total

1.  Stochastic steady state gain in a gene expression process with mRNA degradation control.

Authors:  Hiroyuki Kuwahara; Russell Schwartz
Journal:  J R Soc Interface       Date:  2012-01-11       Impact factor: 4.118

2.  Dcp1 links coactivators of mRNA decapping to Dcp2 by proline recognition.

Authors:  Mark S Borja; Kirill Piotukh; Christian Freund; John D Gross
Journal:  RNA       Date:  2010-12-10       Impact factor: 4.942

3.  Stochastic focusing coupled with negative feedback enables robust regulation in biochemical reaction networks.

Authors:  Andreas Milias-Argeitis; Stefan Engblom; Pavol Bauer; Mustafa Khammash
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

4.  Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation.

Authors:  Eugene Valkov; Sowndarya Muthukumar; Chung-Te Chang; Stefanie Jonas; Oliver Weichenrieder; Elisa Izaurralde
Journal:  Nat Struct Mol Biol       Date:  2016-05-16       Impact factor: 15.369

5.  A split active site couples cap recognition by Dcp2 to activation.

Authors:  Stephen N Floor; Brittnee N Jones; Gail A Hernandez; John D Gross
Journal:  Nat Struct Mol Biol       Date:  2010-08-15       Impact factor: 15.369

6.  The S. pombe mRNA decapping complex recruits cofactors and an Edc1-like activator through a single dynamic surface.

Authors:  Jan Philip Wurm; Jan Overbeck; Remco Sprangers
Journal:  RNA       Date:  2016-06-28       Impact factor: 4.942

  6 in total

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