Literature DB >> 21148770

Dcp1 links coactivators of mRNA decapping to Dcp2 by proline recognition.

Mark S Borja1, Kirill Piotukh, Christian Freund, John D Gross.   

Abstract

Cap hydrolysis is a critical step in several eukaryotic mRNA decay pathways and is carried out by the evolutionarily conserved decapping complex containing Dcp2 at the catalytic core. In yeast, Dcp1 is an essential activator of decapping and coactivators such as Edc1 and Edc2 are thought to enhance activity, though their mechanism remains elusive. Using kinetic analysis we show that a crucial function of Dcp1 is to couple the binding of coactivators of decapping to activation of Dcp2. Edc1 and Edc2 bind Dcp1 via its EVH1 proline recognition site and stimulate decapping by 1000-fold, affecting both the K(M) for mRNA and rate of the catalytic step. The C-terminus of Edc1 is necessary and sufficient to enhance the catalytic step, while the remainder of the protein likely increases mRNA binding to the decapping complex. Lesions in the Dcp1 EVH1 domain or the Edc1 proline-rich sequence are sufficient to block stimulation. These results identify a new role of Dcp1, which is to link the binding of coactivators to substrate recognition and activation of Dcp2.

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Year:  2010        PMID: 21148770      PMCID: PMC3022277          DOI: 10.1261/rna.2382011

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  66 in total

1.  Spot synthesis: observations and optimizations.

Authors:  A Kramer; U Reineke; L Dong; B Hoffmann; U Hoffmüller; D Winkler; R Volkmer-Engert; J Schneider-Mergener
Journal:  J Pept Res       Date:  1999-10

2.  An approach for high-throughput structure determination of proteins by NMR spectroscopy.

Authors:  A Medek; E T Olejniczak; R P Meadows; S W Fesik
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

3.  Dual epitope recognition by the VASP EVH1 domain modulates polyproline ligand specificity and binding affinity.

Authors:  L J Ball; R Kühne; B Hoffmann; A Häfner; P Schmieder; R Volkmer-Engert; M Hof; M Wahl; J Schneider-Mergener; U Walter; H Oschkinat; T Jarchau
Journal:  EMBO J       Date:  2000-09-15       Impact factor: 11.598

4.  Structure of the enabled/VASP homology 1 domain-peptide complex: a key component in the spatial control of actin assembly.

Authors:  K E Prehoda; D J Lee; W A Lim
Journal:  Cell       Date:  1999-05-14       Impact factor: 41.582

5.  Analysis of mutations in the yeast mRNA decapping enzyme.

Authors:  S Tharun; R Parker
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

6.  Synthesis and screening of peptide libraries on continuous cellulose membrane supports.

Authors:  A Kramer; J Schneider-Mergener
Journal:  Methods Mol Biol       Date:  1998

7.  Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae.

Authors:  T Dunckley; M Tucker; R Parker
Journal:  Genetics       Date:  2001-01       Impact factor: 4.562

8.  Yeast Sm-like proteins function in mRNA decapping and decay.

Authors:  S Tharun; W He; A E Mayes; P Lennertz; J D Beggs; R Parker
Journal:  Nature       Date:  2000-03-30       Impact factor: 49.962

9.  Purification and analysis of the decapping activator Lsm1p-7p-Pat1p complex from yeast.

Authors:  Sundaresan Tharun
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

10.  A split active site couples cap recognition by Dcp2 to activation.

Authors:  Stephen N Floor; Brittnee N Jones; Gail A Hernandez; John D Gross
Journal:  Nat Struct Mol Biol       Date:  2010-08-15       Impact factor: 15.369

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  34 in total

1.  The structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex.

Authors:  Simon A Fromm; Vincent Truffault; Julia Kamenz; Joerg E Braun; Niklas A Hoffmann; Elisa Izaurralde; Remco Sprangers
Journal:  EMBO J       Date:  2011-11-15       Impact factor: 11.598

Review 2.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

3.  Structure of the active form of Dcp1-Dcp2 decapping enzyme bound to m7GDP and its Edc3 activator.

Authors:  Clément Charenton; Valerio Taverniti; Claudine Gaudon-Plesse; Régis Back; Bertrand Séraphin; Marc Graille
Journal:  Nat Struct Mol Biol       Date:  2016-10-03       Impact factor: 15.369

Review 4.  mRNA decapping: finding the right structures.

Authors:  Clément Charenton; Marc Graille
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

5.  Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation.

Authors:  Eugene Valkov; Sowndarya Muthukumar; Chung-Te Chang; Stefanie Jonas; Oliver Weichenrieder; Elisa Izaurralde
Journal:  Nat Struct Mol Biol       Date:  2016-05-16       Impact factor: 15.369

6.  A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast.

Authors:  Clément Charenton; Claudine Gaudon-Plesse; Zaineb Fourati; Valerio Taverniti; Régis Back; Olga Kolesnikova; Bertrand Séraphin; Marc Graille
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-24       Impact factor: 11.205

7.  A direct interaction between DCP1 and XRN1 couples mRNA decapping to 5' exonucleolytic degradation.

Authors:  Joerg E Braun; Vincent Truffault; Andreas Boland; Eric Huntzinger; Chung-Te Chang; Gabrielle Haas; Oliver Weichenrieder; Murray Coles; Elisa Izaurralde
Journal:  Nat Struct Mol Biol       Date:  2012-11-11       Impact factor: 15.369

8.  mRNA decapping enzyme 1a (Dcp1a)-induced translational arrest through protein kinase R (PKR) activation requires the N-terminal enabled vasodilator-stimulated protein homology 1 (EVH1) domain.

Authors:  Jonathan D Dougherty; Lucas C Reineke; Richard E Lloyd
Journal:  J Biol Chem       Date:  2013-12-31       Impact factor: 5.157

Review 9.  Structural and functional control of the eukaryotic mRNA decapping machinery.

Authors:  Marcos Arribas-Layton; Donghui Wu; Jens Lykke-Andersen; Haiwei Song
Journal:  Biochim Biophys Acta       Date:  2012-12-31

Review 10.  New insights into decapping enzymes and selective mRNA decay.

Authors:  Ewa Grudzien-Nogalska; Megerditch Kiledjian
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-07-17       Impact factor: 9.957

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