Literature DB >> 17158604

Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development.

Jun Xu1, Jun-Yi Yang, Qi-Wen Niu, Nam-Hai Chua.   

Abstract

mRNA turnover in eukaryotes involves the removal of m7GDP from the 5' end. This decapping reaction is mediated by a protein complex well characterized in yeast and human but not in plants. The function of the decapping complex in the development of multicellular organisms is also poorly understood. Here, we show that Arabidopsis thaliana DCP2 can generate from capped mRNAs, m7GDP, and 5'-phosphorylated mRNAs in vitro and that this decapping activity requires an active Nudix domain. DCP2 interacts in vitro and in vivo with DCP1 and VARICOSE (VCS), an Arabidopsis homolog of human Hedls/Ge-1. Moreover, the interacting proteins stimulate DCP2 activity, suggesting that the three proteins operate as a decapping complex. Consistent with their role in mRNA decay, DCP1, DCP2, and VCS colocalize in cytoplasmic foci, which are putative Arabidopsis processing bodies. Compared with the wild type, null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. We conclude that mRNA turnover mediated by the decapping complex is required for postembryonic development in Arabidopsis.

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Year:  2006        PMID: 17158604      PMCID: PMC1785416          DOI: 10.1105/tpc.106.047605

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  47 in total

1.  Analysis of mutations in the yeast mRNA decapping enzyme.

Authors:  S Tharun; R Parker
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

2.  Arabidopsis interdigitating cell growth requires two antagonistic pathways with opposing action on cell morphogenesis.

Authors:  Ying Fu; Ying Gu; Zhiliang Zheng; Geoffrey Wasteneys; Zhenbiao Yang
Journal:  Cell       Date:  2005-03-11       Impact factor: 41.582

Review 3.  Messenger RNA turnover in eukaryotes: pathways and enzymes.

Authors:  Sylke Meyer; Claudia Temme; Elmar Wahle
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Jul-Aug       Impact factor: 8.250

4.  Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies.

Authors:  George L Sen; Helen M Blau
Journal:  Nat Cell Biol       Date:  2005-05-22       Impact factor: 28.824

5.  The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif.

Authors:  T Dunckley; R Parker
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

6.  A role for eIF4E and eIF4E-transporter in targeting mRNPs to mammalian processing bodies.

Authors:  Maria Alexandra Andrei; Dierk Ingelfinger; Rainer Heintzmann; Tilmann Achsel; Rolando Rivera-Pomar; Reinhard Lührmann
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

7.  Decapping reaction of mRNA requires Dcp1 in fission yeast: its characterization in different species from yeast to human.

Authors:  Takeshi Sakuno; Yasuhiro Araki; Yuriko Ohya; Satoshi Kofuji; Shinya Takahashi; Shin-ichi Hoshino; Toshiaki Katada
Journal:  J Biochem       Date:  2004-12       Impact factor: 3.387

8.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

9.  Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae.

Authors:  L Hatfield; C A Beelman; A Stevens; R Parker
Journal:  Mol Cell Biol       Date:  1996-10       Impact factor: 4.272

10.  A link between mRNA turnover and RNA interference in Arabidopsis.

Authors:  S Gazzani; T Lawrenson; C Woodward; D Headon; R Sablowski
Journal:  Science       Date:  2004-11-05       Impact factor: 47.728

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  115 in total

1.  Dehydration stress activates Arabidopsis MPK6 to signal DCP1 phosphorylation.

Authors:  Jun Xu; Nam-Hai Chua
Journal:  EMBO J       Date:  2012-03-09       Impact factor: 11.598

2.  Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis.

Authors:  Virginie Jouannet; Ana Beatriz Moreno; Taline Elmayan; Hervé Vaucheret; Martin D Crespi; Alexis Maizel
Journal:  EMBO J       Date:  2012-02-10       Impact factor: 11.598

Review 3.  Processing bodies and plant development.

Authors:  Jun Xu; Nam-Hai Chua
Journal:  Curr Opin Plant Biol       Date:  2010-11-11       Impact factor: 7.834

4.  Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing.

Authors:  Ana Eulalio; Jan Rehwinkel; Mona Stricker; Eric Huntzinger; Schu-Fee Yang; Tobias Doerks; Silke Dorner; Peer Bork; Michael Boutros; Elisa Izaurralde
Journal:  Genes Dev       Date:  2007-09-27       Impact factor: 11.361

5.  Crystal structure of human Edc3 and its functional implications.

Authors:  Sharon H M Ling; Carolyn J Decker; Martin A Walsh; Meipei She; Roy Parker; Haiwei Song
Journal:  Mol Cell Biol       Date:  2008-08-04       Impact factor: 4.272

Review 6.  Biogenesis, turnover, and mode of action of plant microRNAs.

Authors:  Kestrel Rogers; Xuemei Chen
Journal:  Plant Cell       Date:  2013-07-23       Impact factor: 11.277

7.  Processing-body movement in Arabidopsis depends on an interaction between myosins and DECAPPING PROTEIN1.

Authors:  Alexandra Steffens; Benjamin Jaegle; Achim Tresch; Martin Hülskamp; Marc Jakoby
Journal:  Plant Physiol       Date:  2014-02-13       Impact factor: 8.340

8.  Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation.

Authors:  Yuling Jiao; José Luis Riechmann; Elliot M Meyerowitz
Journal:  Plant Cell       Date:  2008-10-24       Impact factor: 11.277

9.  Insights into post-transcriptional regulation during legume-rhizobia symbiosis.

Authors:  Mauricio Alberto Reynoso; Flavio Antonio Blanco; María Eugenia Zanetti
Journal:  Plant Signal Behav       Date:  2012-12-06

10.  LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development.

Authors:  Carlos Perea-Resa; Tamara Hernández-Verdeja; Rosa López-Cobollo; María del Mar Castellano; Julio Salinas
Journal:  Plant Cell       Date:  2012-12-07       Impact factor: 11.277

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