Literature DB >> 18840610

Structural insight into the kinetics and DeltaCp of interactions between TEM-1 beta-lactamase and beta-lactamase inhibitory protein (BLIP).

Jihong Wang1, Timothy Palzkill, Dar-Chone Chow.   

Abstract

In a previous study, we examined thermodynamic parameters for 20 alanine mutants in beta-lactamase inhibitory protein (BLIP) for binding to TEM-1 beta-lactamase. Here we have determined the structures of two thermodynamically distinctive complexes of BLIP mutants with TEM-1 beta-lactamase. The complex BLIP Y51A-TEM-1 is a tight binding complex with the most negative binding heat capacity change (DeltaG = approximately -13 kcal mol(-1) and DeltaCp = approximately -0.8 kcal mol(-1) K(-1)) among all of the mutants, whereas BLIP W150A-TEM-1 is a weak complex with one of the least negative binding heat capacity changes (DeltaG = approximately -8.5 kcal mol(-1) and DeltaCp = approximately -0.27 kcal mol(-1) K(-1)). We previously determined that BLIP Tyr51 is a canonical and Trp150 an anti-canonical TEM-1-contact residue, where canonical refers to the alanine substitution resulting in a matched change in the hydrophobicity of binding free energy. Structure determination indicates a rearrangement of the interactions between Asp49 of the W150A BLIP mutant and the catalytic pocket of TEM-1. The Asp49 of W150A moves more than 4 angstroms to form two new hydrogen bonds while losing four original hydrogen bonds. This explains the anti-canonical nature of the Trp150 to alanine substitution, and also reveals a strong long distance coupling between Trp150 and Asp49 of BLIP, because these two residues are more than 25 angstroms apart. Kinetic measurements indicate that the mutations influence the dissociation rate but not the association rate. Further analysis of the structures indicates that an increased number of interface-trapped water molecules correlate with poor interface packing in a mutant. It appears that the increase of interface-trapped water molecules is inversely correlated with negative binding heat capacity changes.

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Year:  2008        PMID: 18840610      PMCID: PMC2610523          DOI: 10.1074/jbc.M804089200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  59 in total

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2.  Design of potent beta-lactamase inhibitors by phage display of beta-lactamase inhibitory protein.

Authors:  W Huang; Z Zhang; T Palzkill
Journal:  J Biol Chem       Date:  2000-05-19       Impact factor: 5.157

3.  Estimation of the hydrophobic effect in an antigen-antibody protein-protein interface.

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Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

4.  Rational design of faster associating and tighter binding protein complexes.

Authors:  T Selzer; S Albeck; G Schreiber
Journal:  Nat Struct Biol       Date:  2000-07

5.  Binding properties of a peptide derived from beta-lactamase inhibitory protein.

Authors:  G W Rudgers; W Huang; T Palzkill
Journal:  Antimicrob Agents Chemother       Date:  2001-12       Impact factor: 5.191

6.  Protein minimization by random fragmentation and selection.

Authors:  G W Rudgers; T Palzkill
Journal:  Protein Eng       Date:  2001-07

7.  Proteinminus signProtein Interactions: Interface Structure, Binding Thermodynamics, and Mutational Analysis.

Authors:  Wesley E. Stites
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8.  Principles of protein-protein recognition.

Authors:  C Chothia; J Janin
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Authors:  Fahd K Majiduddin; Isabel C Materon; Timothy G Palzkill
Journal:  Int J Med Microbiol       Date:  2002-07       Impact factor: 3.473

10.  van't Hoff and calorimetric enthalpies II: effects of linked equilibria.

Authors:  James R Horn; John F Brandts; Kenneth P Murphy
Journal:  Biochemistry       Date:  2002-06-11       Impact factor: 3.162

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  15 in total

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Authors:  N G Brown; T Palzkill
Journal:  Protein Eng Des Sel       Date:  2010-03-22       Impact factor: 1.650

2.  A structure-based benchmark for protein-protein binding affinity.

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Authors:  Bartlomiej G Fryszczyn; Nicholas G Brown; Wanzhi Huang; Miriam A Balderas; Timothy Palzkill
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Review 5.  Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions.

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Journal:  Methods       Date:  2012-12-24       Impact factor: 3.608

6.  Molecular dynamics of class A β-lactamases-effects of substrate binding.

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Journal:  Biophys J       Date:  2012-10-16       Impact factor: 4.033

7.  Role of β-lactamase residues in a common interface for binding the structurally unrelated inhibitory proteins BLIP and BLIP-II.

Authors:  Bartlomiej G Fryszczyn; Carolyn J Adamski; Nicholas G Brown; Kacie Rice; Wanzhi Huang; Timothy Palzkill
Journal:  Protein Sci       Date:  2014-07-01       Impact factor: 6.725

8.  Spectroscopic analysis and docking simulation on the recognition and binding of TEM-1 β-lactamase with β-lactam antibiotics.

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Journal:  Exp Ther Med       Date:  2017-07-31       Impact factor: 2.447

9.  Identification of a β-lactamase inhibitory protein variant that is a potent inhibitor of Staphylococcus PC1 β-lactamase.

Authors:  Ji Yuan; Dar-Chone Chow; Wanzhi Huang; Timothy Palzkill
Journal:  J Mol Biol       Date:  2011-01-13       Impact factor: 5.469

10.  Engineering Specificity from Broad to Narrow: Design of a β-Lactamase Inhibitory Protein (BLIP) Variant That Exclusively Binds and Detects KPC β-Lactamase.

Authors:  Dar-Chone Chow; Kacie Rice; Wanzhi Huang; Robert L Atmar; Timothy Palzkill
Journal:  ACS Infect Dis       Date:  2016-10-26       Impact factor: 5.084

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