Literature DB >> 18787828

Multiscale agent-based cancer modeling.

Le Zhang1, Zhihui Wang, Jonathan A Sagotsky, Thomas S Deisboeck.   

Abstract

Agent-based modeling (ABM) is an in silico technique that is being used in a variety of research areas such as in social sciences, economics and increasingly in biomedicine as an interdisciplinary tool to study the dynamics of complex systems. Here, we describe its applicability to integrative tumor biology research by introducing a multi-scale tumor modeling platform that understands brain cancer as a complex dynamic biosystem. We summarize significant findings of this work, and discuss both challenges and future directions for ABM in the field of cancer research.

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Year:  2008        PMID: 18787828     DOI: 10.1007/s00285-008-0211-1

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  42 in total

1.  Agent-based computer simulation and sirs: building a bridge between basic science and clinical trials.

Authors:  G An
Journal:  Shock       Date:  2001-10       Impact factor: 3.454

2.  Development of a three-dimensional multiscale agent-based tumor model: simulating gene-protein interaction profiles, cell phenotypes and multicellular patterns in brain cancer.

Authors:  Le Zhang; Chaitanya A Athale; Thomas S Deisboeck
Journal:  J Theor Biol       Date:  2006-07-27       Impact factor: 2.691

3.  In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

Authors:  Gary An
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

4.  A continuum approach to modelling cell-cell adhesion.

Authors:  Nicola J Armstrong; Kevin J Painter; Jonathan A Sherratt
Journal:  J Theor Biol       Date:  2006-06-07       Impact factor: 2.691

5.  Evolution of searching and life history characteristics in individual-based models of host-parasitoid-microbe associations.

Authors:  Peter Schofield; Mark Chaplain; Stephen Hubbard
Journal:  J Theor Biol       Date:  2005-11-07       Impact factor: 2.691

6.  Effect of epidermal growth factor on glioma cell growth, migration, and invasion in vitro.

Authors:  M Lund-Johansen; R Bjerkvig; P A Humphrey; S H Bigner; D D Bigner; O D Laerum
Journal:  Cancer Res       Date:  1990-09-15       Impact factor: 12.701

7.  Fractal landscapes and molecular evolution: modeling the myosin heavy chain gene family.

Authors:  S V Buldyrev; A L Goldberger; S Havlin; C K Peng; H E Stanley; M H Stanley; M Simons
Journal:  Biophys J       Date:  1993-12       Impact factor: 4.033

8.  Simulating the impact of a molecular 'decision-process' on cellular phenotype and multicellular patterns in brain tumors.

Authors:  Chaitanya Athale; Yuri Mansury; Thomas S Deisboeck
Journal:  J Theor Biol       Date:  2004-11-30       Impact factor: 2.691

9.  Is walking a random walk? Evidence for long-range correlations in stride interval of human gait.

Authors:  J M Hausdorff; C K Peng; Z Ladin; J Y Wei; A L Goldberger
Journal:  J Appl Physiol (1985)       Date:  1995-01

10.  The impact of "search precision" in an agent-based tumor model.

Authors:  Yuri Mansury; Thomas S Deisboeck
Journal:  J Theor Biol       Date:  2003-10-07       Impact factor: 2.691

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  42 in total

1.  Spatial aspects in biological system simulations.

Authors:  Haluk Resat; Michelle N Costa; Harish Shankaran
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

Review 2.  Designing and encoding models for synthetic biology.

Authors:  Lukas Endler; Nicolas Rodriguez; Nick Juty; Vijayalakshmi Chelliah; Camille Laibe; Chen Li; Nicolas Le Novère
Journal:  J R Soc Interface       Date:  2009-04-01       Impact factor: 4.118

Review 3.  Systems biology beyond networks: generating order from disorder through self-organization.

Authors:  K Saetzler; C Sonnenschein; A M Soto
Journal:  Semin Cancer Biol       Date:  2011-05-06       Impact factor: 15.707

4.  Discovering Molecular Targets in Cancer with Multiscale Modeling.

Authors:  Zhihui Wang; Veronika Bordas; Thomas S Deisboeck
Journal:  Drug Dev Res       Date:  2011-02-01       Impact factor: 4.360

5.  Immature oxidative stress management as a unifying principle in the pathogenesis of necrotizing enterocolitis: insights from an agent-based model.

Authors:  Moses Kim; Scott Christley; John C Alverdy; Donald Liu; Gary An
Journal:  Surg Infect (Larchmt)       Date:  2012-01-04       Impact factor: 2.150

6.  Patient-calibrated agent-based modelling of ductal carcinoma in situ (DCIS): from microscopic measurements to macroscopic predictions of clinical progression.

Authors:  Paul Macklin; Mary E Edgerton; Alastair M Thompson; Vittorio Cristini
Journal:  J Theor Biol       Date:  2012-02-09       Impact factor: 2.691

7.  Investigation of bone resorption within a cortical basic multicellular unit using a lattice-based computational model.

Authors:  Pascal R Buenzli; Junhwan Jeon; Peter Pivonka; David W Smith; Peter T Cummings
Journal:  Bone       Date:  2011-10-30       Impact factor: 4.398

8.  Rule-Based Simulation of Multi-Cellular Biological Systems-A Review of Modeling Techniques.

Authors:  Minki Hwang; Marc Garbey; Scott A Berceli; Roger Tran-Son-Tay
Journal:  Cell Mol Bioeng       Date:  2009-09       Impact factor: 2.321

9.  Modeling intrinsic heterogeneity and growth of cancer cells.

Authors:  James M Greene; Doron Levy; King Leung Fung; Paloma S Souza; Michael M Gottesman; Orit Lavi
Journal:  J Theor Biol       Date:  2014-11-29       Impact factor: 2.691

Review 10.  Applications of genome-scale metabolic reconstructions.

Authors:  Matthew A Oberhardt; Bernhard Ø Palsson; Jason A Papin
Journal:  Mol Syst Biol       Date:  2009-11-03       Impact factor: 11.429

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