Literature DB >> 15748909

Simulating the impact of a molecular 'decision-process' on cellular phenotype and multicellular patterns in brain tumors.

Chaitanya Athale1, Yuri Mansury, Thomas S Deisboeck.   

Abstract

Experimental evidence indicates that human brain cancer cells proliferate or migrate, yet do not display both phenotypes at the same time. Here, we present a novel computational model simulating this cellular decision-process leading up to either phenotype based on a molecular interaction network of genes and proteins. The model's regulatory network consists of the epidermal growth factor receptor (EGFR), its ligand transforming growth factor-alpha (TGF alpha), the downstream enzyme phospholipaseC-gamma (PLC gamma) and a mitosis-associated response pathway. This network is activated by autocrine TGF alpha secretion, and the EGFR-dependent downstream signaling this step triggers, as well as modulated by an extrinsic nutritive glucose gradient. Employing a framework of mass action kinetics within a multiscale agent-based environment, we analyse both the emergent multicellular behavior of tumor growth and the single-cell molecular profiles that change over time and space. Our results show that one can indeed simulate the dichotomy between cell migration and proliferation based solely on an EGFR decision network. It turns out that these behavioral decisions on the single cell level impact the spatial dynamics of the entire cancerous system. Furthermore, the simulation results yield intriguing experimentally testable hypotheses also on the sub-cellular level such as spatial cytosolic polarization of PLC gamma towards an extrinsic chemotactic gradient. Implications of these results for future works, both on the modeling and experimental side are discussed.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15748909     DOI: 10.1016/j.jtbi.2004.10.019

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  32 in total

1.  Endosomal receptor kinetics determine the stability of intracellular growth factor signalling complexes.

Authors:  A Rami Tzafriri; Elazer R Edelman
Journal:  Biochem J       Date:  2007-03-15       Impact factor: 3.857

2.  The role of extracellular matrix in glioma invasion: a cellular Potts model approach.

Authors:  Brenda M Rubenstein; Laura J Kaufman
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

3.  Density-dependent quiescence in glioma invasion: instability in a simple reaction-diffusion model for the migration/proliferation dichotomy.

Authors:  Kara Pham; Arnaud Chauviere; Haralambos Hatzikirou; Xiangrong Li; Helen M Byrne; Vittorio Cristini; John Lowengrub
Journal:  J Biol Dyn       Date:  2011-06-27       Impact factor: 2.179

Review 4.  Agent-based models in translational systems biology.

Authors:  Gary An; Qi Mi; Joyeeta Dutta-Moscato; Yoram Vodovotz
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Sep-Oct

Review 5.  In silico cancer modeling: is it ready for prime time?

Authors:  Thomas S Deisboeck; Le Zhang; Jeongah Yoon; Jose Costa
Journal:  Nat Clin Pract Oncol       Date:  2008-10-14

6.  A G{alpha}i-GIV molecular complex binds epidermal growth factor receptor and determines whether cells migrate or proliferate.

Authors:  Pradipta Ghosh; Anthony O Beas; Scott J Bornheimer; Mikel Garcia-Marcos; Erin P Forry; Carola Johannson; Jason Ear; Barbara H Jung; Betty Cabrera; John M Carethers; Marilyn G Farquhar
Journal:  Mol Biol Cell       Date:  2010-05-12       Impact factor: 4.138

7.  Nonlinear simulations of solid tumor growth using a mixture model: invasion and branching.

Authors:  Vittorio Cristini; Xiangrong Li; John S Lowengrub; Steven M Wise
Journal:  J Math Biol       Date:  2008-09-12       Impact factor: 2.259

8.  Multiscale agent-based cancer modeling.

Authors:  Le Zhang; Zhihui Wang; Jonathan A Sagotsky; Thomas S Deisboeck
Journal:  J Math Biol       Date:  2008-09-12       Impact factor: 2.259

9.  Computational systems biology in cancer: modeling methods and applications.

Authors:  Wayne Materi; David S Wishart
Journal:  Gene Regul Syst Bio       Date:  2007-09-17

10.  Advancing cancer systems biology: introducing the Center for the Development of a Virtual Tumor, CViT.

Authors:  Thomas S Deisboeck; Le Zhang; Sean Martin
Journal:  Cancer Inform       Date:  2007-03-30
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.