Literature DB >> 11580108

Agent-based computer simulation and sirs: building a bridge between basic science and clinical trials.

G An1.   

Abstract

The management of Systemic Inflammatory Response Syndrome (SIRS)/Multiple Organ Failure (MOF) remains the greatest challenge in the field of critical care. There has been uniform difficulty in translating the results of basic science research into effective therapeutic regimes. We propose that this is due in part to a failure to account for the complex, nonlinear nature of the inflammatory process of which SIRS/MOF represents a disordered state. Attempts to manipulate this process without an understanding of the dynamics of the system may potentially produce unintended consequences. Agent-Based Computer Simulation (ABCS) provides a means to synthesize the information acquired from the linear analysis of basic science into a model that preserves the complexity of the inflammatory system. We have constructed an abstracted version of the inflammatory process using an ABCS that is based at the cellular level. Despite its abstraction, the simulation produces non-linear behavior and reproduces the dynamic structure of the inflammatory response. Furthermore, adjustment of the simulation to model one of the unsuccessful initial anti-inflammatory trials of the 1990's demonstrates the adverse outcome that was observed in those clinical trials. It must be emphasized that the current model is extremely abstract and simplified. However, it is hoped that future ABCSs of sufficient sophistication eventually may provide an important bridging tool to translate basic science discoveries into clinical applications. Creating these simulations will require a large collaborative effort, and it is hoped that this paper will stimulate interest in this form of analysis.

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Year:  2001        PMID: 11580108     DOI: 10.1097/00024382-200116040-00006

Source DB:  PubMed          Journal:  Shock        ISSN: 1073-2322            Impact factor:   3.454


  54 in total

1.  Using stylized agent-based models for population-environment research: A case study from the Galápagos Islands.

Authors:  Brian W Miller; Ian Breckheimer; Amy L McCleary; Liza Guzmán-Ramirez; Susan C Caplow; Jessica C Jones-Smith; Stephen J Walsh
Journal:  Popul Environ       Date:  2010-05-01

Review 2.  Systems immunology: a survey of modeling formalisms, applications and simulation tools.

Authors:  Vipin Narang; James Decraene; Shek-Yoon Wong; Bindu S Aiswarya; Andrew R Wasem; Shiang Rong Leong; Alexandre Gouaillard
Journal:  Immunol Res       Date:  2012-09       Impact factor: 2.829

Review 3.  Translational potential of systems-based models of inflammation.

Authors:  P T Foteinou; S E Calvano; S F Lowry; I P Androulakis
Journal:  Clin Transl Sci       Date:  2009-02       Impact factor: 4.689

Review 4.  Translational systems approaches to the biology of inflammation and healing.

Authors:  Yoram Vodovotz; Gregory Constantine; James Faeder; Qi Mi; Jonathan Rubin; John Bartels; Joydeep Sarkar; Robert H Squires; David O Okonkwo; Jörg Gerlach; Ruben Zamora; Shirley Luckhart; Bard Ermentrout; Gary An
Journal:  Immunopharmacol Immunotoxicol       Date:  2010-06       Impact factor: 2.730

5.  In silico and in vivo approach to elucidate the inflammatory complexity of CD14-deficient mice.

Authors:  Jose M Prince; Ryan M Levy; John Bartels; Arie Baratt; John M Kane; Claudio Lagoa; Jonathan Rubin; Judy Day; Joyce Wei; Mitchell P Fink; Sanna M Goyert; Gilles Clermont; Timothy R Billiar; Yoram Vodovotz
Journal:  Mol Med       Date:  2006 Apr-Jun       Impact factor: 6.354

6.  Evidence-based modeling of critical illness: an initial consensus from the Society for Complexity in Acute Illness.

Authors:  Yoram Vodovotz; Gilles Clermont; C Anthony Hunt; Rolf Lefering; John Bartels; Ruediger Seydel; John Hotchkiss; Shlomo Ta'asan; Edmund Neugebauer; Gary An
Journal:  J Crit Care       Date:  2007-03       Impact factor: 3.425

Review 7.  Translational systems biology: introduction of an engineering approach to the pathophysiology of the burn patient.

Authors:  Gary An; James Faeder; Yoram Vodovotz
Journal:  J Burn Care Res       Date:  2008 Mar-Apr       Impact factor: 1.845

8.  Sepsis reconsidered: Identifying novel metrics for behavioral landscape characterization with a high-performance computing implementation of an agent-based model.

Authors:  Chase Cockrell; Gary An
Journal:  J Theor Biol       Date:  2017-07-18       Impact factor: 2.691

9.  Parameter estimation and sensitivity analysis in an agent-based model of Leishmania major infection.

Authors:  Garrett M Dancik; Douglas E Jones; Karin S Dorman
Journal:  J Theor Biol       Date:  2009-10-23       Impact factor: 2.691

10.  A mathematical simulation of the inflammatory response to anthrax infection.

Authors:  Rukmini Kumar; Carson C Chow; John D Bartels; Gilles Clermont; Yoram Vodovotz
Journal:  Shock       Date:  2008-01       Impact factor: 3.454

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