Literature DB >> 18780728

ADBP-1 regulates an ADAR RNA-editing enzyme to antagonize RNA-interference-mediated gene silencing in Caenorhabditis elegans.

Hiromitsu Ohta1, Manabi Fujiwara, Yasumi Ohshima, Takeshi Ishihara.   

Abstract

Small interfering RNAs (siRNAs) and microRNAs (miRNAs) mediate gene silencing through evolutionarily conserved pathways. In Caenorhabditis elegans, the siRNA/miRNA pathways are also known to affect transgene expression. To identify genes that regulate the efficiencies of the siRNA/miRNA pathways, we used the expression level of a transgene as an indicator of gene silencing and isolated a transgene-silencing mutant, adbp-1 (ADR-2 binding protein). The adbp-1 mutation caused transgene silencing in hypodermal and intestinal cells in a cell-autonomous manner, depending on the RNA interference (RNAi) machinery. The adbp-1 gene encodes a protein with no conserved domains that is localized in the nucleus. Yeast two-hybrid screening and co-immunoprecipitation analysis demonstrated that ADBP-1 physically interacts with ADR-2, an RNA-editing enzyme from the ADAR (adenosine deaminase acting on dsRNA) family. In the adbp-1 mutant, as previously shown in adr-2 mutants, A-to-I RNA editing was not detected, suggesting that ADBP-1 is required for the RNA-editing activity of ADR-2. We found that ADBP-1 facilitates the nuclear localization of ADR-2. ADBP-1 may regulate ADR-2 activity and the consequent RNA editing and thereby antagonize RNAi-mediated transgene silencing in C. elegans.

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Year:  2008        PMID: 18780728      PMCID: PMC2567380          DOI: 10.1534/genetics.108.093310

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  46 in total

1.  Dynamic association of RNA-editing enzymes with the nucleolus.

Authors:  Joana M P Desterro; Liam P Keegan; Miguel Lafarga; Maria Teresa Berciano; Mary O'Connell; Maria Carmo-Fonseca
Journal:  J Cell Sci       Date:  2003-05-01       Impact factor: 5.285

2.  MicroRNAs and other tiny endogenous RNAs in C. elegans.

Authors:  Victor Ambros; Rosalind C Lee; Ann Lavanway; Peter T Williams; David Jewell
Journal:  Curr Biol       Date:  2003-05-13       Impact factor: 10.834

3.  RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans.

Authors:  Leath A Tonkin; Lisa Saccomanno; Daniel P Morse; Thomas Brodigan; Michael Krause; Brenda L Bass
Journal:  EMBO J       Date:  2002-11-15       Impact factor: 11.598

4.  Transport of dsRNA into cells by the transmembrane protein SID-1.

Authors:  Evan H Feinberg; Craig P Hunter
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

5.  Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene.

Authors:  Emeline Sarot; Geneviève Payen-Groschêne; Alain Bucheton; Alain Pélisson
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

6.  Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi.

Authors:  Femke Simmer; Marcel Tijsterman; Susan Parrish; Sandhya P Koushika; Michael L Nonet; Andrew Fire; Julie Ahringer; Ronald H A Plasterk
Journal:  Curr Biol       Date:  2002-08-06       Impact factor: 10.834

7.  Regulation of the different chromatin states of autosomes and X chromosomes in the germ line of C. elegans.

Authors:  Youyi Fong; Laurel Bender; Wenchao Wang; Susan Strome
Journal:  Science       Date:  2002-06-21       Impact factor: 47.728

8.  Extrachromosomal DNA transformation of Caenorhabditis elegans.

Authors:  D T Stinchcomb; J E Shaw; S H Carr; D Hirsh
Journal:  Mol Cell Biol       Date:  1985-12       Impact factor: 4.272

9.  A map of the interactome network of the metazoan C. elegans.

Authors:  Siming Li; Christopher M Armstrong; Nicolas Bertin; Hui Ge; Stuart Milstein; Mike Boxem; Pierre-Olivier Vidalain; Jing-Dong J Han; Alban Chesneau; Tong Hao; Debra S Goldberg; Ning Li; Monica Martinez; Jean-François Rual; Philippe Lamesch; Lai Xu; Muneesh Tewari; Sharyl L Wong; Lan V Zhang; Gabriel F Berriz; Laurent Jacotot; Philippe Vaglio; Jérôme Reboul; Tomoko Hirozane-Kishikawa; Qianru Li; Harrison W Gabel; Ahmed Elewa; Bridget Baumgartner; Debra J Rose; Haiyuan Yu; Stephanie Bosak; Reynaldo Sequerra; Andrew Fraser; Susan E Mango; William M Saxton; Susan Strome; Sander Van Den Heuvel; Fabio Piano; Jean Vandenhaute; Claude Sardet; Mark Gerstein; Lynn Doucette-Stamm; Kristin C Gunsalus; J Wade Harper; Michael E Cusick; Frederick P Roth; David E Hill; Marc Vidal
Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

10.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

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  11 in total

Review 1.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

2.  The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome.

Authors:  Michael C Washburn; Boyko Kakaradov; Balaji Sundararaman; Emily Wheeler; Shawn Hoon; Gene W Yeo; Heather A Hundley
Journal:  Cell Rep       Date:  2014-02-06       Impact factor: 9.423

Review 3.  A-to-I RNA editing - thinking beyond the single nucleotide.

Authors:  Nabeel S Ganem; Ayelet T Lamm
Journal:  RNA Biol       Date:  2017-10-11       Impact factor: 4.652

Review 4.  Molecular diversity through RNA editing: a balancing act.

Authors:  Sanaz Farajollahi; Stefan Maas
Journal:  Trends Genet       Date:  2010-04-13       Impact factor: 11.639

Review 5.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

6.  Large-scale mRNA sequencing determines global regulation of RNA editing during brain development.

Authors:  Helene Wahlstedt; Chammiran Daniel; Mats Ensterö; Marie Ohman
Journal:  Genome Res       Date:  2009-05-06       Impact factor: 9.043

7.  Disruption in A-to-I Editing Levels Affects C. elegans Development More Than a Complete Lack of Editing.

Authors:  Nabeel S Ganem; Noa Ben-Asher; Aidan C Manning; Sarah N Deffit; Michael C Washburn; Emily C Wheeler; Gene W Yeo; Orna Ben-Naim Zgayer; Einav Mantsur; Heather A Hundley; Ayelet T Lamm
Journal:  Cell Rep       Date:  2019-04-23       Impact factor: 9.423

8.  A-to-I RNA editing promotes developmental stage-specific gene and lncRNA expression.

Authors:  Boaz Goldstein; Lily Agranat-Tamir; Dean Light; Orna Ben-Naim Zgayer; Alla Fishman; Ayelet T Lamm
Journal:  Genome Res       Date:  2016-12-28       Impact factor: 9.043

9.  Inverted repeat structures are associated with essential and highly expressed genes on C. elegans autosome distal arms.

Authors:  Daniel P Reich; Brenda L Bass
Journal:  RNA       Date:  2018-09-06       Impact factor: 4.942

10.  The Influence of Competition Among C. elegans Small RNA Pathways on Development.

Authors:  Jimmy J Zhuang; Craig P Hunter
Journal:  Genes (Basel)       Date:  2012-10-19       Impact factor: 4.096

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