Literature DB >> 14704431

A map of the interactome network of the metazoan C. elegans.

Siming Li1, Christopher M Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J Han, Alban Chesneau, Tong Hao, Debra S Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L Wong, Lan V Zhang, Gabriel F Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E Mango, William M Saxton, Susan Strome, Sander Van Den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C Gunsalus, J Wade Harper, Michael E Cusick, Frederick P Roth, David E Hill, Marc Vidal.   

Abstract

To initiate studies on how protein-protein interaction (or "interactome") networks relate to multicellular functions, we have mapped a large fraction of the Caenorhabditis elegans interactome network. Starting with a subset of metazoan-specific proteins, more than 4000 interactions were identified from high-throughput, yeast two-hybrid (HT=Y2H) screens. Independent coaffinity purification assays experimentally validated the overall quality of this Y2H data set. Together with already described Y2H interactions and interologs predicted in silico, the current version of the Worm Interactome (WI5) map contains approximately 5500 interactions. Topological and biological features of this interactome network, as well as its integration with phenome and transcriptome data sets, lead to numerous biological hypotheses.

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Year:  2004        PMID: 14704431      PMCID: PMC1698949          DOI: 10.1126/science.1091403

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  26 in total

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Authors:  Debra S Goldberg; Frederick P Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

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Journal:  Trends Genet       Date:  2003-10       Impact factor: 11.639

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Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

5.  Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.

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Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

6.  Evolution and tinkering.

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Journal:  Science       Date:  1977-06-10       Impact factor: 47.728

7.  C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

Authors:  Jérôme Reboul; Philippe Vaglio; Jean-François Rual; Philippe Lamesch; Monica Martinez; Christopher M Armstrong; Siming Li; Laurent Jacotot; Nicolas Bertin; Rekin's Janky; Troy Moore; James R Hudson; James L Hartley; Michael A Brasch; Jean Vandenhaute; Simon Boulton; Gregory A Endress; Sarah Jenna; Eric Chevet; Vasilis Papasotiropoulos; Peter P Tolias; Jason Ptacek; Mike Snyder; Raymond Huang; Mark R Chance; Hongmei Lee; Lynn Doucette-Stamm; David E Hill; Marc Vidal
Journal:  Nat Genet       Date:  2003-05       Impact factor: 38.330

8.  Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline.

Authors:  Albertha J M Walhout; Jérôme Reboul; Olena Shtanko; Nicolas Bertin; Philippe Vaglio; Hui Ge; Hongmei Lee; Lynn Doucette-Stamm; Kristin C Gunsalus; Aaron J Schetter; Diane G Morton; Kenneth J Kemphues; Valerie Reinke; Stuart K Kim; Fabio Piano; Marc Vidal
Journal:  Curr Biol       Date:  2002-11-19       Impact factor: 10.834

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Journal:  Development       Date:  2003-07       Impact factor: 6.868

10.  egl-27 generates anteroposterior patterns of cell fusion in C. elegans by regulating Hox gene expression and Hox protein function.

Authors:  Q Ch'ng; C Kenyon
Journal:  Development       Date:  1999-08       Impact factor: 6.868

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Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

6.  Generation of the Brucella melitensis ORFeome version 1.1.

Authors:  Amélie Dricot; Jean-François Rual; Philippe Lamesch; Nicolas Bertin; Denis Dupuy; Tong Hao; Christophe Lambert; Régis Hallez; Jean-Marc Delroisse; Jean Vandenhaute; Ignacio Lopez-Goñi; Ignacio Moriyon; Juan M Garcia-Lobo; Félix J Sangari; Alastair P Macmillan; Sally J Cutler; Adrian M Whatmore; Stephanie Bozak; Reynaldo Sequerra; Lynn Doucette-Stamm; Marc Vidal; David E Hill; Jean-Jacques Letesson; Xavier De Bolle
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

8.  Human ORFeome version 1.1: a platform for reverse proteomics.

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Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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10.  Construction and application of a protein interaction map for white spot syndrome virus (WSSV).

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Journal:  Mol Cell Proteomics       Date:  2013-11-11       Impact factor: 5.911

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