Literature DB >> 18778799

MicroRNA biogenesis: there's more than one way to skin a cat.

Michael Faller1, Feng Guo.   

Abstract

microRNAs (miRNAs) are extensively involved in developmental programming. Some miRNAs are highly conserved, while others are lineage specific. All miRNAs maturate through a series of processing steps. Here we review recent progresses in the studies of early steps in miRNA biogenesis, focusing on animal systems. The miRNA maturation pathways are surprisingly diverse, involving transcription by RNA polymerase II or III, cleavage by the Drosha nuclease or the spliceosome, and sometimes modifications by the adenosine deaminase ADAR. The relationship between the diversity in miRNA biogenesis and the apparently rapid evolution of miRNA genes and functions is discussed.

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Year:  2008        PMID: 18778799      PMCID: PMC2633599          DOI: 10.1016/j.bbagrm.2008.08.005

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  97 in total

1.  ATP requirements and small interfering RNA structure in the RNA interference pathway.

Authors:  A Nykänen; B Haley; P D Zamore
Journal:  Cell       Date:  2001-11-02       Impact factor: 41.582

2.  Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells.

Authors:  Patrick J Paddison; Amy A Caudy; Emily Bernstein; Gregory J Hannon; Douglas S Conklin
Journal:  Genes Dev       Date:  2002-04-15       Impact factor: 11.361

3.  The microRNAs of Caenorhabditis elegans.

Authors:  Lee P Lim; Nelson C Lau; Earl G Weinstein; Aliaa Abdelhakim; Soraya Yekta; Matthew W Rhoades; Christopher B Burge; David P Bartel
Journal:  Genes Dev       Date:  2003-04-02       Impact factor: 11.361

4.  Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.

Authors:  R F Ketting; S E Fischer; E Bernstein; T Sijen; G J Hannon; R H Plasterk
Journal:  Genes Dev       Date:  2001-10-15       Impact factor: 11.361

5.  A system for stable expression of short interfering RNAs in mammalian cells.

Authors:  Thijn R Brummelkamp; René Bernards; Reuven Agami
Journal:  Science       Date:  2002-03-21       Impact factor: 47.728

6.  miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs.

Authors:  Zissimos Mourelatos; Josée Dostie; Sergey Paushkin; Anup Sharma; Bernard Charroux; Linda Abel; Juri Rappsilber; Matthias Mann; Gideon Dreyfuss
Journal:  Genes Dev       Date:  2002-03-15       Impact factor: 11.361

7.  An extensive class of small RNAs in Caenorhabditis elegans.

Authors:  R C Lee; V Ambros
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

8.  Single-stranded antisense siRNAs guide target RNA cleavage in RNAi.

Authors:  Javier Martinez; Agnieszka Patkaniowska; Henning Urlaub; Reinhard Lührmann; Thomas Tuschl
Journal:  Cell       Date:  2002-09-06       Impact factor: 41.582

9.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

10.  Computational identification of Drosophila microRNA genes.

Authors:  Eric C Lai; Pavel Tomancak; Robert W Williams; Gerald M Rubin
Journal:  Genome Biol       Date:  2003-06-30       Impact factor: 13.583

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  49 in total

Review 1.  Important aspects of Toll-like receptors, ligands and their signaling pathways.

Authors:  Z L Chang
Journal:  Inflamm Res       Date:  2010-07-01       Impact factor: 4.575

2.  Ferric, not ferrous, heme activates RNA-binding protein DGCR8 for primary microRNA processing.

Authors:  Ian Barr; Aaron T Smith; Yanqiu Chen; Rachel Senturia; Judith N Burstyn; Feng Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

3.  Structure of the dimerization domain of DiGeorge critical region 8.

Authors:  Rachel Senturia; Michael Faller; Sheng Yin; Joseph A Loo; Duilio Cascio; Michael R Sawaya; Daniel Hwang; Robert T Clubb; Feng Guo
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

Review 4.  MicroRNA in the immune system, microRNA as an immune system.

Authors:  Li-Fan Lu; Adrian Liston
Journal:  Immunology       Date:  2009-07       Impact factor: 7.397

Review 5.  MicroRNAs and their diverse functions in plants.

Authors:  Guiling Sun
Journal:  Plant Mol Biol       Date:  2011-08-27       Impact factor: 4.076

6.  The evidence for a microRNA product of human DROSHA gene.

Authors:  Peter Mechtler; Sydney Johnson; Hannah Slabodkin; Amir B Cohanim; Leonid Brodsky; Eugene S Kandel
Journal:  RNA Biol       Date:  2017-09-05       Impact factor: 4.652

7.  Association of rs1057035polymorphism in microRNA biogenesis pathway gene (DICER1) with azoospermia among Iranian population.

Authors:  Sahar Moghbelinejad; Reza Najafipour; Abdolmabood Momeni
Journal:  Genes Genomics       Date:  2017-08-29       Impact factor: 1.839

8.  Mature and immature microRNA ratios in cultured rat cardiomyocytes during anoxia-reoxygenation.

Authors:  Victor E Dosenko; Veronika L Gurianova; Olga V Surova; Dmitriy A Stroy; Alex A Moibenko
Journal:  Exp Clin Cardiol       Date:  2012

9.  Antiproliferative effect of upregulation of hsa-let-7c-5p in human acute erythroleukemia cells.

Authors:  Deniz Mortazavi; Mohammadreza Sharifi
Journal:  Cytotechnology       Date:  2018-08-02       Impact factor: 2.058

10.  miRNA-Based Therapeutic Strategies.

Authors:  Masaharu Ishida; Florin M Selaru
Journal:  Curr Anesthesiol Rep       Date:  2012-12-24
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