Literature DB >> 22308374

Ferric, not ferrous, heme activates RNA-binding protein DGCR8 for primary microRNA processing.

Ian Barr1, Aaron T Smith, Yanqiu Chen, Rachel Senturia, Judith N Burstyn, Feng Guo.   

Abstract

The RNA-binding protein DiGeorge Critical Region 8 (DGCR8) and its partner nuclease Drosha are essential for processing of microRNA (miRNA) primary transcripts (pri-miRNAs) in animals. Previous work showed that DGCR8 forms a highly stable and active complex with ferric [Fe(III)] heme using two endogenous cysteines as axial ligands. Here we report that reduction of the heme iron to the ferrous [Fe(II)] state in DGCR8 abolishes the pri-miRNA processing activity. The reduction causes a dramatic increase in the rate of heme dissociation from DGCR8, rendering the complex labile. Electronic absorption, magnetic circular dichroism, and resonance Raman spectroscopies indicate that reduction of the heme iron is accompanied by loss of the cysteines as axial ligands. ApoDGCR8 dimers, generated through reduction and removal of the heme, show low levels of activity in pri-miRNA processing in vitro. Importantly, ferric, but not ferrous, heme restores the activity of apoDGCR8 to the level of the native ferric complex. This study demonstrates binding specificity of DGCR8 for ferric heme, provides direct biochemical evidence for ferric heme serving as an activator for miRNA maturation, and suggests that an intracellular environment increasing the availability of ferric heme may enhance the efficiency of pri-miRNA processing.

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Year:  2012        PMID: 22308374      PMCID: PMC3277547          DOI: 10.1073/pnas.1114514109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  The Microprocessor complex mediates the genesis of microRNAs.

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Journal:  Nature       Date:  2004-11-07       Impact factor: 49.962

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Journal:  J Am Chem Soc       Date:  1974-01-23       Impact factor: 15.419

3.  The association rate constant for heme binding to globin is independent of protein structure.

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Journal:  Biochemistry       Date:  1996-09-03       Impact factor: 3.162

4.  Molecular cloning and expression analysis of a novel gene DGCR8 located in the DiGeorge syndrome chromosomal region.

Authors:  Aiko Shiohama; Takashi Sasaki; Setsuko Noda; Shinsei Minoshima; Nobuyoshi Shimizu
Journal:  Biochem Biophys Res Commun       Date:  2003-04-25       Impact factor: 3.575

5.  Processing of primary microRNAs by the Microprocessor complex.

Authors:  Ahmet M Denli; Bastiaan B J Tops; Ronald H A Plasterk; René F Ketting; Gregory J Hannon
Journal:  Nature       Date:  2004-11-07       Impact factor: 49.962

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7.  Identification of nitric oxide synthase as a thiolate-ligated heme protein using magnetic circular dichroism spectroscopy. Comparison with cytochrome P-450-CAM and chloroperoxidase.

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Journal:  J Biol Chem       Date:  1995-08-25       Impact factor: 5.157

8.  The diverse spectroscopic properties of ferrous cytochrome P-450-CAM ligand complexes.

Authors:  J H Dawson; L A Andersson; M Sono
Journal:  J Biol Chem       Date:  1983-11-25       Impact factor: 5.157

9.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

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Journal:  Biochemistry       Date:  1994-10-04       Impact factor: 3.162

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  36 in total

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Review 2.  Regulation of microRNA biogenesis.

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3.  Heme Gazing: Illuminating Eukaryotic Heme Trafficking, Dynamics, and Signaling with Fluorescent Heme Sensors.

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Journal:  Biochemistry       Date:  2017-03-27       Impact factor: 3.162

4.  Caspases cleave and inhibit the microRNA processing protein DiGeorge Critical Region 8.

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Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

5.  Processing of microRNA primary transcripts requires heme in mammalian cells.

Authors:  Sara H Weitz; Ming Gong; Ian Barr; Shimon Weiss; Feng Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

6.  Cobalt(III) Protoporphyrin Activates the DGCR8 Protein and Can Compensate microRNA Processing Deficiency.

Authors:  Ian Barr; Sara H Weitz; Talia Atkin; PeiKen Hsu; Maria Karayiorgou; Joseph A Gogos; Shimon Weiss; Feng Guo
Journal:  Chem Biol       Date:  2015-06-18

7.  MicroRNAs: New players in cancer prevention targeting Nrf2, oxidative stress and inflammatory pathways.

Authors:  Chengyue Zhang; Limin Shu; Ah-Ng Tony Kong
Journal:  Curr Pharmacol Rep       Date:  2015-01-11

8.  Drosha and Dicer: Slicers cut from the same cloth.

Authors:  Sisi Li; Dinshaw J Patel
Journal:  Cell Res       Date:  2016-04-29       Impact factor: 25.617

9.  The core microprocessor component DiGeorge syndrome critical region 8 (DGCR8) is a nonspecific RNA-binding protein.

Authors:  Braden M Roth; Daniella Ishimaru; Mirko Hennig
Journal:  J Biol Chem       Date:  2013-07-26       Impact factor: 5.157

10.  The DGCR8 RNA-binding heme domain recognizes primary microRNAs by clamping the hairpin.

Authors:  Jen Quick-Cleveland; Jose P Jacob; Sara H Weitz; Grant Shoffner; Rachel Senturia; Feng Guo
Journal:  Cell Rep       Date:  2014-06-06       Impact factor: 9.423

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