Literature DB >> 20506313

Structure of the dimerization domain of DiGeorge critical region 8.

Rachel Senturia1, Michael Faller, Sheng Yin, Joseph A Loo, Duilio Cascio, Michael R Sawaya, Daniel Hwang, Robert T Clubb, Feng Guo.   

Abstract

Maturation of microRNAs (miRNAs, approximately 22nt) from long primary transcripts [primary miRNAs (pri-miRNAs)] is regulated during development and is altered in diseases such as cancer. The first processing step is a cleavage mediated by the Microprocessor complex containing the Drosha nuclease and the RNA-binding protein DiGeorge critical region 8 (DGCR8). We previously reported that dimeric DGCR8 binds heme and that the heme-bound DGCR8 is more active than the heme-free form. Here, we identified a conserved dimerization domain in DGCR8. Our crystal structure of this domain (residues 298-352) at 1.7 A resolution demonstrates a previously unknown use of a WW motif as a platform for extensive dimerization interactions. The dimerization domain of DGCR8 is embedded in an independently folded heme-binding domain and directly contributes to association with heme. Heme-binding-deficient DGCR8 mutants have reduced pri-miRNA processing activity in vitro. Our study provides structural and biochemical bases for understanding how dimerization and heme binding of DGCR8 may contribute to regulation of miRNA biogenesis.

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Year:  2010        PMID: 20506313      PMCID: PMC2974827          DOI: 10.1002/pro.414

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  48 in total

Review 1.  The WW domain: linking cell signalling to the membrane cytoskeleton.

Authors:  Jane L Ilsley; Marius Sudol; Steven J Winder
Journal:  Cell Signal       Date:  2002-03       Impact factor: 4.315

Review 2.  3D domain swapping: as domains continue to swap.

Authors:  Yanshun Liu; David Eisenberg
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

3.  Automated protein model building combined with iterative structure refinement.

Authors:  A Perrakis; R Morris; V S Lamzin
Journal:  Nat Struct Biol       Date:  1999-05

4.  Structure of a WW domain containing fragment of dystrophin in complex with beta-dystroglycan.

Authors:  X Huang; F Poy; R Zhang; A Joachimiak; M Sudol; M J Eck
Journal:  Nat Struct Biol       Date:  2000-08

5.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

6.  A basis for SUMO protease specificity provided by analysis of human Senp2 and a Senp2-SUMO complex.

Authors:  David Reverter; Christopher D Lima
Journal:  Structure       Date:  2004-08       Impact factor: 5.006

7.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

8.  Potential for dramatic improvement in sequence alignment against structures of remote homologous proteins by extracting structural information from multiple structure alignment.

Authors:  Ziding Zhang; Mats Lindstam; Johan Unge; Carsten Peterson; Guoguang Lu
Journal:  J Mol Biol       Date:  2003-09-05       Impact factor: 5.469

9.  Molecular cloning and expression analysis of a novel gene DGCR8 located in the DiGeorge syndrome chromosomal region.

Authors:  Aiko Shiohama; Takashi Sasaki; Setsuko Noda; Shinsei Minoshima; Nobuyoshi Shimizu
Journal:  Biochem Biophys Res Commun       Date:  2003-04-25       Impact factor: 3.575

10.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

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  37 in total

1.  Ferric, not ferrous, heme activates RNA-binding protein DGCR8 for primary microRNA processing.

Authors:  Ian Barr; Aaron T Smith; Yanqiu Chen; Rachel Senturia; Judith N Burstyn; Feng Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

2.  Dynamic origins of differential RNA binding function in two dsRBDs from the miRNA "microprocessor" complex.

Authors:  Christopher Wostenberg; Kaycee A Quarles; Scott A Showalter
Journal:  Biochemistry       Date:  2010-11-22       Impact factor: 3.162

Review 3.  Molecular mechanisms of RNA interference.

Authors:  Ross C Wilson; Jennifer A Doudna
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

4.  Quantitative functions of Argonaute proteins in mammalian development.

Authors:  Dongmei Wang; Zhaojie Zhang; Evan O'Loughlin; Thomas Lee; Stephane Houel; Dónal O'Carroll; Alexander Tarakhovsky; Natalie G Ahn; Rui Yi
Journal:  Genes Dev       Date:  2012-04-01       Impact factor: 11.361

5.  Caspases cleave and inhibit the microRNA processing protein DiGeorge Critical Region 8.

Authors:  Ming Gong; Yanqiu Chen; Rachel Senturia; Matthew Ulgherait; Michael Faller; Feng Guo
Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

6.  Processing of microRNA primary transcripts requires heme in mammalian cells.

Authors:  Sara H Weitz; Ming Gong; Ian Barr; Shimon Weiss; Feng Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

7.  The PRE-Derived NMR Model of the 38.8-kDa Tri-Domain IsdH Protein from Staphylococcus aureus Suggests That It Adaptively Recognizes Human Hemoglobin.

Authors:  Megan Sjodt; Ramsay Macdonald; Thomas Spirig; Albert H Chan; Claire F Dickson; Marian Fabian; John S Olson; David A Gell; Robert T Clubb
Journal:  J Mol Biol       Date:  2015-02-14       Impact factor: 5.469

8.  Deformability in the cleavage site of primary microRNA is not sensed by the double-stranded RNA binding domains in the microprocessor component DGCR8.

Authors:  Kaycee A Quarles; Durga Chadalavada; Scott A Showalter
Journal:  Proteins       Date:  2015-04-28

9.  Energetics underlying hemin extraction from human hemoglobin by Staphylococcus aureus.

Authors:  Megan Sjodt; Ramsay Macdonald; Joanna D Marshall; Joseph Clayton; John S Olson; Martin Phillips; David A Gell; Jeff Wereszczynski; Robert T Clubb
Journal:  J Biol Chem       Date:  2018-03-14       Impact factor: 5.157

10.  Novel mechanism of hemin capture by Hbp2, the hemoglobin-binding hemophore from Listeria monocytogenes.

Authors:  G Reza Malmirchegini; Megan Sjodt; Sergey Shnitkind; Michael R Sawaya; Justin Rosinski; Salete M Newton; Phillip E Klebba; Robert T Clubb
Journal:  J Biol Chem       Date:  2014-10-14       Impact factor: 5.157

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