Literature DB >> 21874378

MicroRNAs and their diverse functions in plants.

Guiling Sun1.   

Abstract

microRNAs (miRNAs) are an extensive class of newly identified small RNAs, which regulate gene expression at the post-transcriptional level by mRNA cleavage or translation inhibition. Currently, there are 3,070 miRNAs deposited in the public available miRNA database; these miRNAs were obtained from 43 plant species using both computational (comparative genomics) and experimental (direct cloning and deep sequencing) approaches. Like other signaling molecules, plant miRNAs can also be moved from one tissue to another through the vascular system. These mobile miRNAs may play an important role in plant nutrient homeostasis and response to environmental biotic and abiotic stresses. In addition, miRNAs also control a wide range of biological and metabolic processes, including developmental timing, tissue-specific development, and stem cell maintenance and differentiation. Currently, a majority of plant miRNA-related researches are purely descriptive, and provide no further detailed mechanistic insight into miRNA-mediated gene regulation and other functions. To better understand the function and regulatory mechanisms of plant miRNAs, more strategies need to be employed to investigate the functions of miRNAs and their associated signaling pathways and gene networks. Elucidating the evolutionary mechanism of miRNAs is also important. It is possible to develop a novel miRNA-based biotechnology for improving plant yield, quality and tolerance to environmental biotic and abiotic stresses besides focusing on basic genetic studies.

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Year:  2011        PMID: 21874378     DOI: 10.1007/s11103-011-9817-6

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  143 in total

Review 1.  MicroRNAs: small RNAs with a big role in gene regulation.

Authors:  Lin He; Gregory J Hannon
Journal:  Nat Rev Genet       Date:  2004-07       Impact factor: 53.242

2.  MicroRNA genes are transcribed by RNA polymerase II.

Authors:  Yoontae Lee; Minju Kim; Jinju Han; Kyu-Hyun Yeom; Sanghyuk Lee; Sung Hee Baek; V Narry Kim
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

Review 3.  Form, function, and regulation of ARGONAUTE proteins.

Authors:  Allison Mallory; Hervé Vaucheret
Journal:  Plant Cell       Date:  2010-12-23       Impact factor: 11.277

4.  Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome.

Authors:  Marcelo A German; Shujun Luo; Gary Schroth; Blake C Meyers; Pamela J Green
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

5.  MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development.

Authors:  Hui-Shan Guo; Qi Xie; Ji-Feng Fei; Nam-Hai Chua
Journal:  Plant Cell       Date:  2005-04-13       Impact factor: 11.277

6.  Over-expression of microRNA169 confers enhanced drought tolerance to tomato.

Authors:  Xiaohui Zhang; Zhe Zou; Pengjuan Gong; Junhong Zhang; Khurram Ziaf; Hanxia Li; Fangming Xiao; Zhibiao Ye
Journal:  Biotechnol Lett       Date:  2010-10-20       Impact factor: 2.461

7.  MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana.

Authors:  Noah Fahlgren; Sanjuro Jogdeo; Kristin D Kasschau; Christopher M Sullivan; Elisabeth J Chapman; Sascha Laubinger; Lisa M Smith; Mark Dasenko; Scott A Givan; Detlef Weigel; James C Carrington
Journal:  Plant Cell       Date:  2010-04-20       Impact factor: 11.277

8.  A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii.

Authors:  Tao Zhao; Guanglin Li; Shijun Mi; Shan Li; Gregory J Hannon; Xiu-Jie Wang; Yijun Qi
Journal:  Genes Dev       Date:  2007-04-30       Impact factor: 11.361

9.  Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.

Authors:  Yukio Kurihara; Akihiro Matsui; Kousuke Hanada; Makiko Kawashima; Junko Ishida; Taeko Morosawa; Maho Tanaka; Eli Kaminuma; Yoshiki Mochizuki; Akihiro Matsushima; Tetsuro Toyoda; Kazuo Shinozaki; Motoaki Seki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

10.  Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome.

Authors:  Charles Addo-Quaye; Tifani W Eshoo; David P Bartel; Michael J Axtell
Journal:  Curr Biol       Date:  2008-05-08       Impact factor: 10.834

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  95 in total

1.  Characterization of grapevine microR164 and its target genes.

Authors:  Xin Sun; Nicholas Kibet Korir; Jian Han; Ling-Fei Shangguan; Emrul Kayesh; Xiang-Peng Leng; Jing-Gui Fang
Journal:  Mol Biol Rep       Date:  2012-06-24       Impact factor: 2.316

2.  Differential regulation of microRNAs in response to osmotic, salt and cold stresses in wheat.

Authors:  Om Prakash Gupta; Nand Lal Meena; Indu Sharma; Pradeep Sharma
Journal:  Mol Biol Rep       Date:  2014-03-30       Impact factor: 2.316

3.  Dynamic architecture and regulatory implications of the miRNA network underlying the response to stress in melon.

Authors:  Alejandro Sanz-Carbonell; Maria Carmen Marques; German Martinez; Gustavo Gomez
Journal:  RNA Biol       Date:  2019-12-10       Impact factor: 4.652

Review 4.  MicroRNA mediated regulation of metal toxicity in plants: present status and future perspectives.

Authors:  O P Gupta; P Sharma; R K Gupta; I Sharma
Journal:  Plant Mol Biol       Date:  2013-08-23       Impact factor: 4.076

5.  Computational identification and comparative analysis of miRNA precursors in three palm species.

Authors:  Aline Cunha da Silva; Clícia Grativol; Flávia Thiebaut; Adriana Silva Hemerly; Paulo Cavalcanti Gomes Ferreira
Journal:  Planta       Date:  2016-02-26       Impact factor: 4.116

6.  RNA-binding protein DUS16 plays an essential role in primary miRNA processing in the unicellular alga Chlamydomonas reinhardtii.

Authors:  Tomohito Yamasaki; Masayuki Onishi; Eun-Jeong Kim; Heriberto Cerutti; Takeshi Ohama
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-31       Impact factor: 11.205

7.  miR398 and miR395 are involved in response to SO2 stress in Arabidopsis thaliana.

Authors:  Lihong Li; Huilan Yi; Meizhao Xue; Min Yi
Journal:  Ecotoxicology       Date:  2017-08-17       Impact factor: 2.823

8.  Characterization and expression patterns of small RNAs in synthesized Brassica hexaploids.

Authors:  Yanyue Shen; Qin Zhao; Jun Zou; Wenliang Wang; Yi Gao; Jinling Meng; Jianbo Wang
Journal:  Plant Mol Biol       Date:  2014-03-02       Impact factor: 4.076

9.  Transcriptome-wide identification and profiling of miRNAs in a stress-tolerant conifer Sabina chinensis.

Authors:  Xian-Ge Hu; Shan-Shan Zhou; Ying Yang; Hui Liu; Shrestha Anil; Qing Wang; Wei Zhao; Qiong Gao; Yousrya El-Kassaby; Tongli Wang; Yue Li; Jian-Feng Mao
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

10.  SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.

Authors:  Zhishuo Wang; Ying Wang; Susanne E Kohalmi; Lisa Amyot; Abdelali Hannoufa
Journal:  Plant Mol Biol       Date:  2016-09-07       Impact factor: 4.076

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