Literature DB >> 18755833

The C-terminal region of Ge-1 presents conserved structural features required for P-body localization.

Martin Jinek1, Ana Eulalio, Andreas Lingel, Sigrun Helms, Elena Conti, Elisa Izaurralde.   

Abstract

The removal of the 5' cap structure by the DCP1-DCP2 decapping complex irreversibly commits eukaryotic mRNAs to degradation. In human cells, the interaction between DCP1 and DCP2 is bridged by the Ge-1 protein. Ge-1 contains an N-terminal WD40-repeat domain connected by a low-complexity region to a conserved C-terminal domain. It was reported that the C-terminal domain interacts with DCP2 and mediates Ge-1 oligomerization and P-body localization. To understand the molecular basis for these functions, we determined the three-dimensional crystal structure of the most conserved region of the Drosophila melanogaster Ge-1 C-terminal domain. The region adopts an all alpha-helical fold related to ARM- and HEAT-repeat proteins. Using structure-based mutants we identified an invariant surface residue affecting P-body localization. The conservation of critical surface and structural residues suggests that the C-terminal region adopts a similar fold with conserved functions in all members of the Ge-1 protein family.

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Year:  2008        PMID: 18755833      PMCID: PMC2553738          DOI: 10.1261/rna.1222908

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  29 in total

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Journal:  Mol Cell       Date:  1999-08       Impact factor: 17.970

2.  A conserved HEAT domain within eIF4G directs assembly of the translation initiation machinery.

Authors:  J Marcotrigiano; I B Lomakin; N Sonenberg; T V Pestova; C U Hellen; S K Burley
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

3.  Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0.

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4.  Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping.

Authors:  Martin Fenger-Grøn; Christy Fillman; Bodil Norrild; Jens Lykke-Andersen
Journal:  Mol Cell       Date:  2005-12-22       Impact factor: 17.970

Review 5.  P bodies: at the crossroads of post-transcriptional pathways.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Elisa Izaurralde
Journal:  Nat Rev Mol Cell Biol       Date:  2007-01       Impact factor: 94.444

6.  More than 1 + 2 in mRNA decapping.

Authors:  Sophie Bail; Megerditch Kiledjian
Journal:  Nat Struct Mol Biol       Date:  2006-01       Impact factor: 15.369

7.  P-body formation is a consequence, not the cause, of RNA-mediated gene silencing.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Daniel Schweizer; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

8.  Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing.

Authors:  Ana Eulalio; Jan Rehwinkel; Mona Stricker; Eric Huntzinger; Schu-Fee Yang; Tobias Doerks; Silke Dorner; Peer Bork; Michael Boutros; Elisa Izaurralde
Journal:  Genes Dev       Date:  2007-09-27       Impact factor: 11.361

9.  Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development.

Authors:  Jun Xu; Jun-Yi Yang; Qi-Wen Niu; Nam-Hai Chua
Journal:  Plant Cell       Date:  2006-12-08       Impact factor: 11.277

10.  ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.

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  17 in total

1.  DCP1 forms asymmetric trimers to assemble into active mRNA decapping complexes in metazoa.

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2.  A direct interaction between DCP1 and XRN1 couples mRNA decapping to 5' exonucleolytic degradation.

Authors:  Joerg E Braun; Vincent Truffault; Andreas Boland; Eric Huntzinger; Chung-Te Chang; Gabrielle Haas; Oliver Weichenrieder; Murray Coles; Elisa Izaurralde
Journal:  Nat Struct Mol Biol       Date:  2012-11-11       Impact factor: 15.369

Review 3.  Cytoplasmic mRNP granules at a glance.

Authors:  Stacy L Erickson; Jens Lykke-Andersen
Journal:  J Cell Sci       Date:  2011-02-01       Impact factor: 5.285

4.  Phosphoproteomic Analyses Reveal Early Signaling Events in the Osmotic Stress Response.

Authors:  Kelly E Stecker; Benjamin B Minkoff; Michael R Sussman
Journal:  Plant Physiol       Date:  2014-05-07       Impact factor: 8.340

5.  Pdc1 functions in the assembly of P bodies in Schizosaccharomyces pombe.

Authors:  Chun-Yu Wang; Wen-Ling Chen; Shao-Win Wang
Journal:  Mol Cell Biol       Date:  2013-01-14       Impact factor: 4.272

Review 6.  RNA granules: the good, the bad and the ugly.

Authors:  María Gabriela Thomas; Mariela Loschi; María Andrea Desbats; Graciela Lidia Boccaccio
Journal:  Cell Signal       Date:  2010-09-08       Impact factor: 4.315

7.  The C-terminal alpha-alpha superhelix of Pat is required for mRNA decapping in metazoa.

Authors:  Joerg E Braun; Felix Tritschler; Gabrielle Haas; Cátia Igreja; Vincent Truffault; Oliver Weichenrieder; Elisa Izaurralde
Journal:  EMBO J       Date:  2010-06-11       Impact factor: 11.598

8.  Drosophila Ge-1 promotes P body formation and oskar mRNA localization.

Authors:  Shih-Jung Fan; Virginie Marchand; Anne Ephrussi
Journal:  PLoS One       Date:  2011-05-31       Impact factor: 3.240

Review 9.  The role of disordered protein regions in the assembly of decapping complexes and RNP granules.

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Journal:  Genes Dev       Date:  2013-12-15       Impact factor: 11.361

10.  The activation of the decapping enzyme DCP2 by DCP1 occurs on the EDC4 scaffold and involves a conserved loop in DCP1.

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Journal:  Nucleic Acids Res       Date:  2014-02-08       Impact factor: 16.971

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