Literature DB >> 14573958

Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0.

G Bricogne1, C Vonrhein, C Flensburg, M Schiltz, W Paciorek.   

Abstract

The methods for treating experimental data in the isomorphous replacement and anomalous scattering methods of macromolecular phase determination have undergone considerable evolution since their inception 50 years ago. The successive formulations used are reviewed, from the most simplistic viewpoint to the most advanced, including the exploration of some blind alleys. A new treatment is proposed and demonstrated for the improved encoding and subsequent exploitation of phase information in the complex plane. It is concluded that there is still considerable scope for further improvements in the statistical analysis of phase information, which touch upon numerous fundamental issues related to data processing and experimental design.

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Year:  2003        PMID: 14573958     DOI: 10.1107/s0907444903017694

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  366 in total

1.  Structural changes in the BH3 domain of SOUL protein upon interaction with the anti-apoptotic protein Bcl-xL.

Authors:  Emmanuele Ambrosi; Stefano Capaldi; Michele Bovi; Gianmaria Saccomani; Massimiliano Perduca; Hugo L Monaco
Journal:  Biochem J       Date:  2011-09-01       Impact factor: 3.857

2.  Structure and mechanism of the tRNA-dependent lantibiotic dehydratase NisB.

Authors:  Manuel A Ortega; Yue Hao; Qi Zhang; Mark C Walker; Wilfred A van der Donk; Satish K Nair
Journal:  Nature       Date:  2014-10-26       Impact factor: 49.962

3.  Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1).

Authors:  Kohei Takeshita; Isao Suetake; Eiki Yamashita; Michihiro Suga; Hirotaka Narita; Atsushi Nakagawa; Shoji Tajima
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

4.  Functional and structural analysis of the siderophore synthetase AsbB through reconstitution of the petrobactin biosynthetic pathway from Bacillus anthracis.

Authors:  Tyler D Nusca; Youngchang Kim; Natalia Maltseva; Jung Yeop Lee; William Eschenfeldt; Lucy Stols; Michael M Schofield; Jamie B Scaglione; Shandee D Dixon; Daniel Oves-Costales; Gregory L Challis; Philip C Hanna; Brian F Pfleger; Andrzej Joachimiak; David H Sherman
Journal:  J Biol Chem       Date:  2012-03-09       Impact factor: 5.157

5.  Classification of a Haemophilus influenzae ABC transporter HI1470/71 through its cognate molybdate periplasmic binding protein, MolA.

Authors:  Leidamarie Tirado-Lee; Allen Lee; Douglas C Rees; Heather W Pinkett
Journal:  Structure       Date:  2011-11-09       Impact factor: 5.006

6.  Crystal structure of HydF scaffold protein provides insights into [FeFe]-hydrogenase maturation.

Authors:  Laura Cendron; Paola Berto; Sarah D'Adamo; Francesca Vallese; Chiara Govoni; Matthew C Posewitz; Giorgio M Giacometti; Paola Costantini; Giuseppe Zanotti
Journal:  J Biol Chem       Date:  2011-11-04       Impact factor: 5.157

7.  Structure of complement C6 suggests a mechanism for initiation and unidirectional, sequential assembly of membrane attack complex (MAC).

Authors:  Alexander E Aleshin; Ingrid U Schraufstatter; Boguslaw Stec; Laurie A Bankston; Robert C Liddington; Richard G DiScipio
Journal:  J Biol Chem       Date:  2012-01-20       Impact factor: 5.157

8.  The 2.8 Å crystal structure of the dynein motor domain.

Authors:  Takahide Kon; Takuji Oyama; Rieko Shimo-Kon; Kenji Imamula; Tomohiro Shima; Kazuo Sutoh; Genji Kurisu
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  Biosynthesis of mycobacterial methylmannose polysaccharides requires a unique 1-O-methyltransferase specific for 3-O-methylated mannosides.

Authors:  Jorge Ripoll-Rozada; Mafalda Costa; José A Manso; Ana Maranha; Vanessa Miranda; André Sequeira; M Rita Ventura; Sandra Macedo-Ribeiro; Pedro José Barbosa Pereira; Nuno Empadinhas
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-03       Impact factor: 11.205

10.  Structure of the archaeal Kae1/Bud32 fusion protein MJ1130: a model for the eukaryotic EKC/KEOPS subcomplex.

Authors:  Arnaud Hecker; Raffaele Lopreiato; Marc Graille; Bruno Collinet; Patrick Forterre; Domenico Libri; Herman van Tilbeurgh
Journal:  EMBO J       Date:  2008-09-03       Impact factor: 11.598

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