Literature DB >> 18726163

Preservation of duplicate genes by originalization.

Cheng Xue1, Yunxin Fu.   

Abstract

Neofunctionalization, subfunctionalization and increasing gene dosage were proposed to be the possible ways to explain duplicate-gene preservation in previous studies. However, in some natural populations, such as yeast Saccharomyces cerevisiae, a considerable proportion of the duplicate genes originated from ancient whole genomic duplication (WGD) is preserved till now, which cannot be sufficiently explained by these mechanisms. In this article, we present another possible way to explain this conundrum-originalization, by which duplicate genes are both preserved intact at a high frequency in the population under only purifying selection. With approximate equal rates of mutation at the two duplicated loci, analytical, numerical and simulation results consistently show that the mean time to nonfunctionalization for unlinked haploinsufficient gene duplication might become markedly prolonged, which results from originalization. These theoretical results imply that originalization might be an alternative effective and temporary way of preserving duplicate genes.

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Year:  2008        PMID: 18726163     DOI: 10.1007/s10709-008-9311-5

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  26 in total

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Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

2.  The altered evolutionary trajectories of gene duplicates.

Authors:  Michael Lynch; Vaishali Katju
Journal:  Trends Genet       Date:  2004-11       Impact factor: 11.639

3.  Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution.

Authors:  Xionglei He; Jianzhi Zhang
Journal:  Genetics       Date:  2005-01-16       Impact factor: 4.562

4.  A novel solution for the time-dependent probability of gene fixation or loss under natural selection.

Authors:  Ying Wang; Bruce Rannala
Journal:  Genetics       Date:  2004-10       Impact factor: 4.562

5.  Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.

Authors:  Adam M Deutschbauer; Daniel F Jaramillo; Michael Proctor; Jochen Kumm; Maureen E Hillenmeyer; Ronald W Davis; Corey Nislow; Guri Giaever
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

6.  Molecular evidence for an ancient duplication of the entire yeast genome.

Authors:  K H Wolfe; D C Shields
Journal:  Nature       Date:  1997-06-12       Impact factor: 49.962

7.  Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes.

Authors:  W H Li
Journal:  Genetics       Date:  1980-05       Impact factor: 4.562

8.  Polymorphism and loss of duplicate gene expression: a theoretical study with application of tetraploid fish.

Authors:  N Takahata; T Maruyama
Journal:  Proc Natl Acad Sci U S A       Date:  1979-09       Impact factor: 11.205

9.  Evolution of duplicate genes in a tetraploid animal, Xenopus laevis.

Authors:  M K Hughes; A L Hughes
Journal:  Mol Biol Evol       Date:  1993-11       Impact factor: 16.240

10.  Dosage sensitivity and the evolution of gene families in yeast.

Authors:  Balázs Papp; Csaba Pál; Laurence D Hurst
Journal:  Nature       Date:  2003-07-10       Impact factor: 49.962

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  7 in total

1.  Genome changes after gene duplication: haploidy vs. diploidy.

Authors:  Cheng Xue; Ren Huang; Taylor J Maxwell; Yun-Xin Fu
Journal:  Genetics       Date:  2010-06-15       Impact factor: 4.562

2.  Molecular evolution of the clustered MIC-3 multigene family of Gossypium species.

Authors:  Zabardast T Buriev; Sukumar Saha; Shukhrat E Shermatov; Johnie N Jenkins; Abdusattor Abdukarimov; David M Stelly; Ibrokhim Y Abdurakhmonov
Journal:  Theor Appl Genet       Date:  2011-08-18       Impact factor: 5.699

3.  Selection-driven divergence after gene duplication in Arabidopsis thaliana.

Authors:  Toni I Gossmann; Karl J Schmid
Journal:  J Mol Evol       Date:  2011-10-02       Impact factor: 2.395

4.  Recombination facilitates neofunctionalization of duplicate genes via originalization.

Authors:  Cheng Xue; Ren Huang; Shu-Qun Liu; Yun-Xin Fu
Journal:  BMC Genet       Date:  2010-06-09       Impact factor: 2.797

5.  Functional copies of the Mst77F gene on the Y chromosome of Drosophila melanogaster.

Authors:  Flavia J Krsticevic; Henrique L Santos; Suelen Januário; Carlos G Schrago; A Bernardo Carvalho
Journal:  Genetics       Date:  2009-11-06       Impact factor: 4.562

6.  The porcine antibody repertoire: variations on the textbook theme.

Authors:  John E Butler; Nancy Wertz
Journal:  Front Immunol       Date:  2012-06-27       Impact factor: 7.561

7.  Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice.

Authors:  Tao Liu; Jiqing Zeng; Kuaifei Xia; Tian Fan; Yuge Li; Yaqin Wang; Xinlan Xu; Mingyong Zhang
Journal:  Rice (N Y)       Date:  2012-06-22       Impact factor: 4.783

  7 in total

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