Literature DB >> 15514078

A novel solution for the time-dependent probability of gene fixation or loss under natural selection.

Ying Wang1, Bruce Rannala.   

Abstract

Kimura proposed a solution for the time-dependent probability of fixation, or loss, of a gene under selection. Example calculations suggest the formulas are prone to numerical inaccuracies. An alternative solution is proposed; the correctness of the solution is confirmed by numerically solving the Kolmogorov backward equation and by simulation.

Mesh:

Year:  2004        PMID: 15514078      PMCID: PMC1448842          DOI: 10.1534/genetics.104.027797

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  11 in total

Review 1.  Estimating allele age.

Authors:  M Slatkin; B Rannala
Journal:  Annu Rev Genomics Hum Genet       Date:  2000       Impact factor: 8.929

2.  Stochastic processes and distribution of gene frequencies under natural selection.

Authors:  M KIMURA
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1955

3.  Average time until fixation of a mutant allele in a finite population under continued mutation pressure: Studies by analytical, numerical, and pseudo-sampling methods.

Authors:  M Kimura
Journal:  Proc Natl Acad Sci U S A       Date:  1980-01       Impact factor: 11.205

4.  Evolution in Mendelian Populations.

Authors:  S Wright
Journal:  Genetics       Date:  1931-03       Impact factor: 4.562

5.  Process Leading to Quasi-Fixation of Genes in Natural Populations Due to Random Fluctuation of Selection Intensities.

Authors:  M Kimura
Journal:  Genetics       Date:  1954-05       Impact factor: 4.562

6.  Experimental studies of the distribution of gene frequencies in very small populations of Drosophila melanogaster: I. Forked. 1954.

Authors:  W E Kerr; S Wright
Journal:  Genet Mol Res       Date:  2009-07-07

7.  Change of gene frequencies by natural selection under population number regulation.

Authors:  M Kimura
Journal:  Proc Natl Acad Sci U S A       Date:  1978-04       Impact factor: 11.205

8.  The length of time required for a selectively neutral mutant to reach fixation through random frequency drift in a finite population.

Authors:  M Kimura
Journal:  Genet Res       Date:  1970-02       Impact factor: 1.588

9.  Selective constraint in protein polymorphism: study of the effectively neutral mutation model by using an improved pseudosampling method.

Authors:  M Kimura; N Takahata
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

Review 10.  Balanced polymorphism selected by genetic versus infectious human disease.

Authors:  Michael Dean; Mary Carrington; Stephen J O'Brien
Journal:  Annu Rev Genomics Hum Genet       Date:  2002-04-15       Impact factor: 8.929

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  3 in total

1.  Complete numerical solution of the diffusion equation of random genetic drift.

Authors:  Lei Zhao; Xingye Yue; David Waxman
Journal:  Genetics       Date:  2013-06-07       Impact factor: 4.562

2.  On the fixation process of a beneficial mutation in a variable environment.

Authors:  Hildegard Uecker; Joachim Hermisson
Journal:  Genetics       Date:  2011-06-06       Impact factor: 4.562

3.  Preservation of duplicate genes by originalization.

Authors:  Cheng Xue; Yunxin Fu
Journal:  Genetica       Date:  2008-08-23       Impact factor: 1.082

  3 in total

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