Literature DB >> 291985

Polymorphism and loss of duplicate gene expression: a theoretical study with application of tetraploid fish.

N Takahata, T Maruyama.   

Abstract

We studied the fixation of null alleles at independent duplicate loci, assuming that wild-type active alleles mutate irreversibly to nonfunctional null alleles and that the population is finite and panmictic. Solving the two-dimensional Kolmogorov backward equation numerically, we obtained the rate at which one of the active genes is lost and the amount of heterozygosity at specified times. Previously harmful genes, including recessive lethals, can be fixed at one of the duplicate loci, which would not happen with a single locus. Examination of data from several fish families showed that the rate of fixation of null alleles is too slow and the amount of heterozygosity too small to be compatible with complete recessivity at all loci. Our conclusion differs in this regard from that of Bailey et al. [Bailey, G.S., Poulter, R. T. M. & Stockwell, P. A. (1978) Proc. Natl. Acad. Sci. USA 75, 5575--5579]. They also reported that the time taken for 50% of the loci to be fixed for null alleles is approximately 15N + v-3/4, in which N and v are the effective population sizgote is lethal. We found that the fixation rate depends not only on N, but also on Nv.

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Year:  1979        PMID: 291985      PMCID: PMC411609          DOI: 10.1073/pnas.76.9.4521

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  9 in total

1.  On some principles governing molecular evolution.

Authors:  M Kimura; T Ohta
Journal:  Proc Natl Acad Sci U S A       Date:  1974-07       Impact factor: 11.205

2.  Gene duplication in tetraploid fish: model for gene silencing at unlinked duplicated loci.

Authors:  G S Bailey; R T Poulter; P A Stockwell
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

3.  Fixation of a deleterious allele at one of two "duplicate" loci by mutation pressure and random drift.

Authors:  M Kimura; J L King
Journal:  Proc Natl Acad Sci U S A       Date:  1979-06       Impact factor: 11.205

4.  Evidence for duplication and divergence of the structural gene for phosphoglucoisomerase in diploid species of clarkia.

Authors:  L D Gottlieb
Journal:  Genetics       Date:  1977-06       Impact factor: 4.562

5.  Gene Duplication within the Family Salmonidae: Disomic Inheritance of Two Loci Reported to Be Tetrasomic in Rainbow Trout.

Authors:  F W Allendorf; F M Utter
Journal:  Genetics       Date:  1973-08       Impact factor: 4.562

6.  Loss of duplicate gene expression after polyploidisation.

Authors:  S D Ferris; G S Whitt
Journal:  Nature       Date:  1977-01-20       Impact factor: 49.962

7.  Tetraploid origin of the karyotype of catostomid fishes.

Authors:  T Uyeno; G R Smith
Journal:  Science       Date:  1972-02-11       Impact factor: 47.728

8.  Gene duplication in the family Salmonidae. III. Linkage between two duplicated loci coding for aspartate aminotransferase in the cutthroat trout (Salmo clarki).

Authors:  F W Allendorf; F M Utter
Journal:  Hereditas       Date:  1976       Impact factor: 3.271

9.  Spontaneous mutation rates at enzyme loci in Drosophila melanogaster.

Authors:  T Mukai; C C Cockerham
Journal:  Proc Natl Acad Sci U S A       Date:  1977-06       Impact factor: 11.205

  9 in total
  29 in total

1.  Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses.

Authors:  B S Gaut
Journal:  Genome Res       Date:  2001-01       Impact factor: 9.043

2.  Selection-mutation balance in polysomic tetraploids: impact of double reduction and gametophytic selection on the frequency and subchromosomal localization of deleterious mutations.

Authors:  D V Butruille; L S Boiteux
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

3.  The probability of duplicate gene preservation by subfunctionalization.

Authors:  M Lynch; A Force
Journal:  Genetics       Date:  2000-01       Impact factor: 4.562

4.  The probability of preservation of a newly arisen gene duplicate.

Authors:  M Lynch; M O'Hely; B Walsh; A Force
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

Review 5.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

6.  Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish.

Authors:  Angel Amores; Tohru Suzuki; Yi-Lin Yan; Jordan Pomeroy; Amy Singer; Chris Amemiya; John H Postlethwait
Journal:  Genome Res       Date:  2004-01       Impact factor: 9.043

7.  A diffusion approach to approximating preservation probabilities for gene duplicates.

Authors:  Martin O'Hely
Journal:  J Math Biol       Date:  2006-05-06       Impact factor: 2.259

Review 8.  Population genetic models of duplicated genes.

Authors:  Hideki Innan
Journal:  Genetica       Date:  2009-03-06       Impact factor: 1.082

9.  Mean time to resolution of gene duplication.

Authors:  Cheng Xue; Yunxin Fu
Journal:  Genetica       Date:  2008-09-05       Impact factor: 1.082

10.  Developmental rate and viability of rainbow trout with a null allele at a lactate dehydrogenase locus.

Authors:  M M Ferguson; K L Knudsen; R G Danzmann; F W Allendorf
Journal:  Biochem Genet       Date:  1988-02       Impact factor: 1.890

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