Literature DB >> 19495981

Construction of bacteriophage phi29 DNA packaging motor and its applications in nanotechnology and therapy.

Tae Jin Lee1, Chad Schwartz, Peixuan Guo.   

Abstract

Nanobiotechnology involves the creation, characterization, and modification of organized nanomaterials to serve as building blocks for constructing nanoscale devices in technology and medicine. Living systems contain a wide variety of nanomachines and highly ordered structures of macromolecules. The novelty and ingenious design of the bacterial virus phi29 DNA packaging motor and its parts inspired the synthesis of this motor and its components as biomimetics. This 30-nm nanomotor uses six copies of an ATP-binding pRNA to gear the motor. The structural versatility of pRNA has been utilized to construct dimers, trimers, hexamers, and patterned superstructures via the interaction of two interlocking loops. The approach, based on bottom-up assembly, has also been applied to nanomachine fabrication, pathogen detection and the delivery of drugs, siRNA, ribozymes, and genes to specific cells in vitro and in vivo. Another essential component of the motor is the connector, which contains 12 copies of a protein gp10 to form a 3.6-nm central channel as a path for DNA. This article will review current studies of the structure and function of the phi29 DNA packaging motor, as well as the mechanism of motion, the principle of in vitro construction, and its potential nanotechnological and medical applications.

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Year:  2009        PMID: 19495981      PMCID: PMC2855900          DOI: 10.1007/s10439-009-9723-0

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   3.934


  135 in total

1.  Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle.

Authors:  Alicia Guasch; Joan Pous; Borja Ibarra; F Xavier Gomis-Rüth; José María Valpuesta; Natalia Sousa; José L Carrascosa; Miquel Coll
Journal:  J Mol Biol       Date:  2002-01-25       Impact factor: 5.469

2.  RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles.

Authors:  D Ferrandon; I Koch; E Westhof; C Nüsslein-Volhard
Journal:  EMBO J       Date:  1997-04-01       Impact factor: 11.598

3.  Bottom-up Assembly of RNA Arrays and Superstructures as Potential Parts in Nanotechnology.

Authors:  Dan Shu; Wulf-Dieter Moll; Zhaoxiang Deng; Chengde Mao; Peixuan Guo
Journal:  Nano Lett       Date:  2004-09       Impact factor: 11.189

4.  Mechanism of force generation of a viral DNA packaging motor.

Authors:  Yann R Chemla; K Aathavan; Jens Michaelis; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Carlos Bustamante
Journal:  Cell       Date:  2005-09-09       Impact factor: 41.582

Review 5.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

6.  DNA-guided crystallization of colloidal nanoparticles.

Authors:  Dmytro Nykypanchuk; Mathew M Maye; Daniel van der Lelie; Oleg Gang
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

7.  Conformational flexibility facilitates self-assembly of complex DNA nanostructures.

Authors:  Chuan Zhang; Min Su; Yu He; Xin Zhao; Ping-an Fang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-30       Impact factor: 11.205

Review 8.  Designing peptide based nanomaterials.

Authors:  Rein V Ulijn; Andrew M Smith
Journal:  Chem Soc Rev       Date:  2008-01-10       Impact factor: 54.564

9.  Construction of folate-conjugated pRNA of bacteriophage phi29 DNA packaging motor for delivery of chimeric siRNA to nasopharyngeal carcinoma cells.

Authors:  S Guo; F Huang; P Guo
Journal:  Gene Ther       Date:  2006-05       Impact factor: 5.250

Review 10.  Viral nanomotors for packaging of dsDNA and dsRNA.

Authors:  Peixuan Guo; Tae Jin Lee
Journal:  Mol Microbiol       Date:  2007-05       Impact factor: 3.501

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  17 in total

1.  Different sequences show similar quaternary interaction stabilities in prohead viral RNA self-assembly.

Authors:  Xiaobo Gu; Susan J Schroeder
Journal:  J Biol Chem       Date:  2011-02-24       Impact factor: 5.157

Review 2.  The DNA-packaging nanomotor of tailed bacteriophages.

Authors:  Sherwood R Casjens
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

3.  Robust properties of membrane-embedded connector channel of bacterial virus phi29 DNA packaging motor.

Authors:  Peng Jing; Farzin Haque; Anne P Vonderheide; Carlo Montemagno; Peixuan Guo
Journal:  Mol Biosyst       Date:  2010-06-04

4.  Three-way junction conformation dictates self-association of phage packaging RNAs.

Authors:  Yumeng Hao; Jeffrey S Kieft
Journal:  RNA Biol       Date:  2016-05-24       Impact factor: 4.652

5.  Role of channel lysines and the "push through a one-way valve" mechanism of the viral DNA packaging motor.

Authors:  Huaming Fang; Peng Jing; Farzin Haque; Peixuan Guo
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

6.  Agarose gel electrophoresis reveals structural fluidity of a phage T3 DNA packaging intermediate.

Authors:  Philip Serwer; Elena T Wright
Journal:  Electrophoresis       Date:  2012-01       Impact factor: 3.535

7.  Two-stage, self-cycling process for the production of bacteriophages.

Authors:  Dominic Sauvageau; David G Cooper
Journal:  Microb Cell Fact       Date:  2010-11-01       Impact factor: 5.328

Review 8.  Bacteriophages and phage-inspired nanocarriers for targeted delivery of therapeutic cargos.

Authors:  Mahdi Karimi; Hamed Mirshekari; Seyed Masoud Moosavi Basri; Sajad Bahrami; Mohsen Moghoofei; Michael R Hamblin
Journal:  Adv Drug Deliv Rev       Date:  2016-03-17       Impact factor: 15.470

9.  Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae.

Authors:  Julianne H Grose; Sherwood R Casjens
Journal:  Virology       Date:  2014-11       Impact factor: 3.616

Review 10.  Common mechanisms of DNA translocation motors in bacteria and viruses using one-way revolution mechanism without rotation.

Authors:  Peixuan Guo; Zhengyi Zhao; Jeannie Haak; Shaoying Wang; Dong Wu; Bing Meng; Tao Weitao
Journal:  Biotechnol Adv       Date:  2014 Jul-Aug       Impact factor: 14.227

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