Literature DB >> 18663584

Structural modeling of glucanase-substrate complexes suggests a conserved tyrosine is involved in carbohydrate recognition in plant 1,3-1,4-beta-D-glucanases.

Li-Chu Tsai1, Yi-Ning Chen, Lie-Fen Shyur.   

Abstract

Glycosyl hydrolase family 16 (GHF16) truncated Fibrobacter succinogenes (TFs) and GHF17 barley 1,3-1,4-beta-D-glucanases (beta-glucanases) possess different structural folds, beta-jellyroll and (beta/alpha)8, although they both catalyze the specific hydrolysis of beta-1,4 glycosidic bonds adjacent to beta-1,3 linkages in mixed beta-1,3 and beta-1,4 beta-D-glucans or lichenan. Differences in the active site region residues of TFs beta-glucanase and barley beta-glucanase create binding site topographies that require different substrate conformations. In contrast to barley beta-glucanase, TFs beta-glucanase possesses a unique and compact active site. The structural analysis results suggest that the tyrosine residue, which is conserved in all known 1,3-1,4-beta-D-glucanases, is involved in the recognition of mixed beta-1,3 and beta-1,4 linked polysaccharide.

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Year:  2008        PMID: 18663584     DOI: 10.1007/s10822-008-9228-1

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  28 in total

1.  Directed mutagenesis of apecific active site residues on Fibrobacter succinogenes 1,3-1,4-beta -D-glucanase significantly affects catalysis and enzyme structural stability.

Authors:  J L Chen; L C Tsai; T N Wen; J B Tang; H S Yuan; L F Shyur
Journal:  J Biol Chem       Date:  2001-03-02       Impact factor: 5.157

2.  Crystal structure of a natural circularly permuted jellyroll protein: 1,3-1,4-beta-D-glucanase from Fibrobacter succinogenes.

Authors:  Li-Chu Tsai; Lie-Fen Shyur; Shu-Hua Lee; Su-Shiang Lin; Hanna S Yuan
Journal:  J Mol Biol       Date:  2003-07-11       Impact factor: 5.469

3.  Crystal structure of the cellulase Cel9M enlightens structure/function relationships of the variable catalytic modules in glycoside hydrolases.

Authors:  G Parsiegla; A Belaïch; J P Belaïch; R Haser
Journal:  Biochemistry       Date:  2002-09-17       Impact factor: 3.162

4.  A new substrate for investigating the specificity of beta-glucan hydrolases.

Authors:  M A Anderson; B A Stone
Journal:  FEBS Lett       Date:  1975-04-01       Impact factor: 4.124

5.  Beta-glucosidase, beta-galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes with 8-fold beta/alpha architecture and with two conserved glutamates near the carboxy-terminal ends of beta-strands four and seven.

Authors:  J Jenkins; L Lo Leggio; G Harris; R Pickersgill
Journal:  FEBS Lett       Date:  1995-04-10       Impact factor: 4.124

6.  Crystal structure of barley 1,3-1,4-beta-glucanase at 2.0-A resolution and comparison with Bacillus 1,3-1,4-beta-glucanase.

Authors:  J J Müller; K K Thomsen; U Heinemann
Journal:  J Biol Chem       Date:  1998-02-06       Impact factor: 5.157

7.  Crystal structure at 1.45-A resolution of the major allergen endo-beta-1,3-glucanase of banana as a molecular basis for the latex-fruit syndrome.

Authors:  Véronique Receveur-Bréchot; Mirjam Czjzek; Annick Barre; Alain Roussel; Willy J Peumans; Els J M Van Damme; Pierre Rougé
Journal:  Proteins       Date:  2006-04-01

8.  Purification and characterization of (1-->3, 1-->4)-beta-glucan endohydrolases from germinated wheat (Triticum aestivum).

Authors:  D M Lai; P B Høj; G B Fincher
Journal:  Plant Mol Biol       Date:  1993-08       Impact factor: 4.076

9.  Structural basis for the substrate specificity of a Bacillus 1,3-1,4-beta-glucanase.

Authors:  Olaf J Gaiser; Kirill Piotukh; Mondikalipudur N Ponnuswamy; Antoni Planas; Rainer Borriss; Udo Heinemann
Journal:  J Mol Biol       Date:  2006-01-25       Impact factor: 5.469

10.  Probing the mechanism of Bacillus 1,3-1,4-beta-D-glucan 4-glucanohydrolases by chemical rescue of inactive mutants at catalytically essential residues.

Authors:  J L Viladot; E de Ramon; O Durany; A Planas
Journal:  Biochemistry       Date:  1998-08-11       Impact factor: 3.162

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  4 in total

1.  Paenibacillus sp. strain E18 bifunctional xylanase-glucanase with a single catalytic domain.

Authors:  Pengjun Shi; Jian Tian; Tiezheng Yuan; Xin Liu; Huoqing Huang; Yingguo Bai; Peilong Yang; Xiaoyan Chen; Ningfeng Wu; Bin Yao
Journal:  Appl Environ Microbiol       Date:  2010-04-09       Impact factor: 4.792

2.  Recombinant β-1,3-1,4-glucanase from Theobroma cacao impairs Moniliophthora perniciosa mycelial growth.

Authors:  Dahyana Santos Britto; Carlos Priminho Pirovani; Bruno Silva Andrade; Tassiara Pereira Dos Santos; Cristina Pungartnik; Júlio Cezar M Cascardo; Fabienne Micheli; Abelmon S Gesteira
Journal:  Mol Biol Rep       Date:  2013-05-13       Impact factor: 2.316

3.  Variation in barley (1 → 3, 1 → 4)-β-glucan endohydrolases reveals novel allozymes with increased thermostability.

Authors:  Juanita C Lauer; Suong Cu; Rachel A Burton; Jason K Eglinton
Journal:  Theor Appl Genet       Date:  2017-02-26       Impact factor: 5.699

4.  TAF1A and ZBTB41 serve as novel key genes in cervical cancer identified by integrated approaches.

Authors:  Mingyuan Wang; Jingnan Liao; Jinjin Wang; Mingming Qi; Kangkai Wang; Wei Wu
Journal:  Cancer Gene Ther       Date:  2020-12-12       Impact factor: 5.987

  4 in total

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