Literature DB >> 18633715

Identification of C-terminal neighbours of amino acid residues without an aliphatic 13Cgamma as an aid to NMR assignments in proteins.

Ravi Pratap Barnwal1, Ashok K Rout, Hanudatta S Atreya, Kandala V R Chary.   

Abstract

We propose a methodology that uses GFT (3,2)D CB(CACO)NNH experiment to rapidly collect the data and readily identify six amino acid residue types (Ala, Asn, Asp, Cys, Gly and Ser) in any given protein. Further, the experiment can distinguish the redox state of Cys residues. The proposed experiment in its two forms will have wide range of applications in resonance assignment strategies and structure determination of proteins.

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Year:  2008        PMID: 18633715     DOI: 10.1007/s10858-008-9254-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.582


  23 in total

Review 1.  Impact of transverse relaxation optimized spectroscopy (TROSY) on NMR as a technique in structural biology.

Authors:  K Pervushin
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318

2.  G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment.

Authors:  Hanudatta S Atreya; Thomas Szyperski
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

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Authors:  Lewis E Kay; Mitsuhiko Ikura; Rolf Tschudin; Ad Bax
Journal:  J Magn Reson       Date:  2011-12       Impact factor: 2.229

4.  Editing for amino-acid type in CBCACONH experiments based on the 13C beta-13C gamma coupling.

Authors:  V Dötsch; G Wagner
Journal:  J Magn Reson B       Date:  1996-06

5.  Amino-acid-type identification for deuterated proteins with a beta-carbon-edited HNCOCACB experiment.

Authors:  V Dötsch; H Matsuo; G Wagner
Journal:  J Magn Reson B       Date:  1996-07

6.  Expression and nitrogen-15 labeling of proteins for proton and nitrogen-15 nuclear magnetic resonance.

Authors:  D C Muchmore; L P McIntosh; C B Russell; D E Anderson; F W Dahlquist
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

7.  Magnetic susceptibility tensor anisotropies for a lanthanide ion series in a fixed protein matrix.

Authors:  I Bertini; M B Janik; Y M Lee; C Luchinat; A Rosato
Journal:  J Am Chem Soc       Date:  2001-05-09       Impact factor: 15.419

8.  A tracked approach for automated NMR assignments in proteins (TATAPRO).

Authors:  H S Atreya; S C Sahu; K V Chary; G Govil
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

9.  Selective 'unlabeling' of amino acids in fractionally 13C labeled proteins: an approach for stereospecific NMR assignments of CH3 groups in Val and Leu residues.

Authors:  H S Atreya; K V Chary
Journal:  J Biomol NMR       Date:  2001-03       Impact factor: 2.835

10.  Energetics and mechanism of Ca2+ displacement by lanthanides in a calcium binding protein.

Authors:  Sourajit M Mustafi; Sulakshana Mukherjee; Kandala V R Chary; Cristina Del Bianco; Claudio Luchinat
Journal:  Biochemistry       Date:  2004-07-27       Impact factor: 3.162

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  8 in total

1.  Functional manipulation of a calcium-binding protein from Entamoeba histolytica guided by paramagnetic NMR.

Authors:  Ashok K Rout; Sunita Patel; Manish Shukla; Deepa Saraswathi; Alok Bhattacharya; Kandala V R Chary
Journal:  J Biol Chem       Date:  2013-06-19       Impact factor: 5.157

2.  AUTOBA: automation of backbone assignment from HN(C)N suite of experiments.

Authors:  Aditi Borkar; Dinesh Kumar; Ramakrishna V Hosur
Journal:  J Biomol NMR       Date:  2011-05-29       Impact factor: 2.835

3.  New amino acid residue type identification experiments valid for protonated and deuterated proteins.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Biomol NMR       Date:  2012-09-04       Impact factor: 2.835

4.  Chemical shift based editing of CH3 groups in fractionally 13C-labelled proteins using GFT (3, 2)D CT-HCCH-COSY: stereospecific assignments of CH3 groups of Val and Leu residues.

Authors:  Ravi Pratap Barnwal; Hanudatta S Atreya; Kandala V R Chary
Journal:  J Biomol NMR       Date:  2008-09-23       Impact factor: 2.835

5.  Biophysical Reviews' "Meet the Councilor Series"-a profile of Kandala V. R. Chary.

Authors:  Kandala V R Chary
Journal:  Biophys Rev       Date:  2021-12-08

6.  Amino acid selective unlabeling for sequence specific resonance assignments in proteins.

Authors:  B Krishnarjuna; Garima Jaipuria; Anushikha Thakur; Patrick D'Silva; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2010-12-09       Impact factor: 2.835

7.  Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins.

Authors:  Alessandro Piai; Leonardo Gonnelli; Isabella C Felli; Roberta Pierattelli; Krzysztof Kazimierczuk; Katarzyna Grudziąż; Wiktor Koźmiński; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2016-02-18       Impact factor: 2.835

8.  Guanidine-HCl dependent structural unfolding of M-crystallin: fluctuating native state like topologies and intermolecular association.

Authors:  Ravi Pratap Barnwal; Geetika Agarwal; Kandala V R Chary
Journal:  PLoS One       Date:  2012-12-17       Impact factor: 3.240

  8 in total

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