Literature DB >> 18810645

Chemical shift based editing of CH3 groups in fractionally 13C-labelled proteins using GFT (3, 2)D CT-HCCH-COSY: stereospecific assignments of CH3 groups of Val and Leu residues.

Ravi Pratap Barnwal1, Hanudatta S Atreya, Kandala V R Chary.   

Abstract

We propose a (3, 2)D CT-HCCH-COSY experiment to rapidly collect the data and provide significant dispersion in the spectral region containing (13)C-(1)H cross peaks of CH(3) groups belonging to Ala, Ile, Leu, Met, Thr and Val residues. This enables one to carry out chemical shift based editing and grouping of all the (13)C-(1)H cross peaks of CH(3) groups belonging to Ala, Ile, Leu, Met, Thr and Val residues in fractionally (10%) (13)C-labelled proteins, which in turn aids in the sequence-specific resonance assignments in general and side-chain resonance assignments in particular, in any given protein. Further, we demonstrate the utility of this experiment for stereospecific assignments of the pro-R and pro-S methyl groups belonging to the Leu and Val residues in fractionally (10%) (13)C-labelled proteins. The proposed experiment opens up a wide range of applications in resonance assignment strategies and structure determination of proteins.

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Year:  2008        PMID: 18810645     DOI: 10.1007/s10858-008-9273-z

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  18 in total

Review 1.  Impact of transverse relaxation optimized spectroscopy (TROSY) on NMR as a technique in structural biology.

Authors:  K Pervushin
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318

Review 2.  Principles and applications of GFT projection NMR spectroscopy.

Authors:  Thomas Szyperski; Hanudatta S Atreya
Journal:  Magn Reson Chem       Date:  2006-07       Impact factor: 2.447

3.  NMR assignment of M-crystallin: a novel Ca2+ binding protein of the betagamma-crystallin superfamily from Methanosarcina acetivorans.

Authors:  Ravi P Barnwal; Maroor K Jobby; Yogendra Sharma; Kandala V R Chary
Journal:  J Biomol NMR       Date:  2006       Impact factor: 2.835

4.  Rapid measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides.

Authors:  Ravi Pratap Barnwal; Ashok K Rout; Kandala V R Chary; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2007-10-04       Impact factor: 2.835

5.  Stereospecific assignments of Val and Leu methyl groups in a selectively 13C-labeled 18 kDa polypeptide using 3D CT-(H) CCH-COSY and 2d 1Jc-c edited heteronuclear correlation experiments.

Authors:  W Hu; E R Zuiderweg
Journal:  J Magn Reson B       Date:  1996-10

6.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

7.  NMR derived solution structure of an EF-hand calcium-binding protein from Entamoeba Histolytica.

Authors:  H S Atreya; S C Sahu; A Bhattacharya; K V Chary; G Govil
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Stereospecific assignments of the leucine methyl resonances in the 1H NMR spectrum of Lactobacillus casei dihydrofolate reductase.

Authors:  G Ostler; A Soteriou; C M Moody; J A Khan; B Birdsall; M D Carr; D W Young; J Feeney
Journal:  FEBS Lett       Date:  1993-03-01       Impact factor: 4.124

10.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

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  5 in total

1.  High resolution methyl selective ¹³C-NMR of proteins in solution and solid state.

Authors:  Garima Jaipuria; Nitin Prakash Lobo; Divya Shet; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2012-07-11       Impact factor: 2.835

2.  Structural and biochemical analysis of the assembly and function of the yeast pre-mRNA 3' end processing complex CF I.

Authors:  Ravi Pratap Barnwal; Susan D Lee; Claire Moore; Gabriele Varani
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-10       Impact factor: 11.205

3.  High-resolution methyl edited GFT NMR experiments for protein resonance assignments and structure determination.

Authors:  Garima Jaipuria; Anushikha Thakur; Patrick D'Silva; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2010-09-14       Impact factor: 2.835

4.  Biophysical Reviews' "Meet the Councilor Series"-a profile of Kandala V. R. Chary.

Authors:  Kandala V R Chary
Journal:  Biophys Rev       Date:  2021-12-08

5.  Guanidine-HCl dependent structural unfolding of M-crystallin: fluctuating native state like topologies and intermolecular association.

Authors:  Ravi Pratap Barnwal; Geetika Agarwal; Kandala V R Chary
Journal:  PLoS One       Date:  2012-12-17       Impact factor: 3.240

  5 in total

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