Literature DB >> 15210958

G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment.

Hanudatta S Atreya1, Thomas Szyperski.   

Abstract

A G-matrix Fourier transform (GFT) NMR spectroscopy-based strategy for resonance assignment of proteins is described. Each of the GFT NMR experiments presented here rapidly affords four-, five-, or six-dimensional spectral information in combination with precise measurements of chemical shifts. The resulting high information content enables one to obtain nearly complete assignments by using only four NMR experiments. For the backbone amide proton detected "out-and-back" experiments, data collection was further accelerated up to approximately 2.5-fold by use of longitudinal (1)H relaxation optimization. The GFT NMR experiments were acquired for three proteins with molecular masses ranging from 8.6 to 17 kDa, demonstrating that the proposed strategy is of key interest for automated resonance assignment in structural genomics.

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Year:  2004        PMID: 15210958      PMCID: PMC470728          DOI: 10.1073/pnas.0403529101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

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Authors:  G T Montelione; D Zheng; Y J Huang; K C Gunsalus; T Szyperski
Journal:  Nat Struct Biol       Date:  2000-11

2.  Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data.

Authors:  H N Moseley; D Monleon; G T Montelione
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

3.  MUSIC and aromatic residues: amino acid type-selective (1)H-(15)N correlations, III.

Authors:  M Schubert; H Oschkinat; P Schmieder
Journal:  J Magn Reson       Date:  2001-12       Impact factor: 2.229

4.  Reduced-dimensionality NMR spectroscopy for high-throughput protein resonance assignment.

Authors:  Thomas Szyperski; Deok C Yeh; Dinesh K Sukumaran; Hunter N B Moseley; Gaetano T Montelione
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

5.  Structural biology. Propelled by recent advances, NMR moves into the fast lane.

Authors:  Robert F Service
Journal:  Science       Date:  2003-01-24       Impact factor: 47.728

6.  GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

7.  Rapid analysis of protein backbone resonance assignments using cryogenic probes, a distributed Linux-based computing architecture, and an integrated set of spectral analysis tools.

Authors:  Daniel Monleón; Kimberly Colson; Hunter N B Moseley; Clemens Anklin; Robert Oswald; Thomas Szyperski; Gaetano T Montelione
Journal:  J Struct Funct Genomics       Date:  2002

8.  Solution structure of the 30 kDa N-terminal domain of enzyme I of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system by multidimensional NMR.

Authors:  D S Garrett; Y J Seok; D I Liao; A Peterkofsky; A M Gronenborn; G M Clore
Journal:  Biochemistry       Date:  1997-03-04       Impact factor: 3.162

9.  1H, 13C, and 15N resonance assignments and secondary structure of the PWI domain from SRm160 using reduced dimensionality NMR.

Authors:  Blair R Szymczyna; Antonio Pineda-Lucena; Jeffrey L Mills; Thomas Szyperski; Cheryl H Arrowsmith
Journal:  J Biomol NMR       Date:  2002-03       Impact factor: 2.835

10.  Longitudinal (1)H relaxation optimization in TROSY NMR spectroscopy.

Authors:  Konstantin Pervushin; Beat Vögeli; Alexander Eletsky
Journal:  J Am Chem Soc       Date:  2002-10-30       Impact factor: 15.419

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  50 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  SAGA: rapid automatic mainchain NMR assignment for large proteins.

Authors:  Gordon M Crippen; Aikaterini Rousaki; Matthew Revington; Yongbo Zhang; Erik R P Zuiderweg
Journal:  J Biomol NMR       Date:  2010-03-16       Impact factor: 2.835

3.  Advances in Nuclear Magnetic Resonance for Drug Discovery.

Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

4.  GFT NMR based resonance assignment for the 21 kDa human protein UFC1.

Authors:  Gaohua Liu; James Aramini; Hanudatta S Atreya; Alexander Eletsky; Rong Xiao; Thomas Acton; Lichung Ma; Gaetano T Montelione; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2005-07       Impact factor: 2.835

5.  Dual acquisition magic-angle spinning solid-state NMR-spectroscopy: simultaneous acquisition of multidimensional spectra of biomacromolecules.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  Angew Chem Int Ed Engl       Date:  2012-02-06       Impact factor: 15.336

6.  GFT projection NMR based resonance assignment of membrane proteins: application to subunit C of E. coli F(1)F (0) ATP synthase in LPPG micelles.

Authors:  Qi Zhang; Hanudatta S Atreya; Douglas E Kamen; Mark E Girvin; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2008-02-14       Impact factor: 2.835

7.  NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors.

Authors:  Kiran Kumar Singarapu; Rong Xiao; Thomas Acton; Burkhard Rost; Gaetano T Montelione; Thomas Szyperski
Journal:  Proteins       Date:  2008-05-01

8.  Fast automated protein NMR data collection and assignment by ADAPT-NMR on Bruker spectrometers.

Authors:  Woonghee Lee; Kaifeng Hu; Marco Tonelli; Arash Bahrami; Elizabeth Neuhardt; Karen C Glass; John L Markley
Journal:  J Magn Reson       Date:  2013-08-30       Impact factor: 2.229

9.  Chemical shift based editing of CH3 groups in fractionally 13C-labelled proteins using GFT (3, 2)D CT-HCCH-COSY: stereospecific assignments of CH3 groups of Val and Leu residues.

Authors:  Ravi Pratap Barnwal; Hanudatta S Atreya; Kandala V R Chary
Journal:  J Biomol NMR       Date:  2008-09-23       Impact factor: 2.835

10.  Clean absorption-mode NMR data acquisition.

Authors:  Yibing Wu; Arindam Ghosh; Thomas Szyperski
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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