Literature DB >> 22945427

New amino acid residue type identification experiments valid for protonated and deuterated proteins.

David Pantoja-Uceda1, Jorge Santoro.   

Abstract

Two experiments are presented that yield amino acid type identification of individual residues in a protein by editing the (1)H-(15)N correlations into four different 2D subspectra, each corresponding to a different amino acid type class, and that can be applied to deuterated proteins. One experiment provides information on the amino acid type of the residue preceding the detected amide (1)H-(15)N correlation, while the other gives information on the type of its own residue. Versions for protonated proteins are also presented, and in this case it is possible to classify the residues into six different classes. Both sequential and intraresidue experiments provide highly complementary information, greatly facilitating the assignment of protein resonances. The experiments will also assist in transferring the assignment of a protein to the spectra obtained under different experimental conditions (e.g. temperature, pH, presence of ligands, cofactors, etc.).

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Year:  2012        PMID: 22945427     DOI: 10.1007/s10858-012-9665-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  30 in total

1.  MUSIC and aromatic residues: amino acid type-selective (1)H-(15)N correlations, III.

Authors:  M Schubert; H Oschkinat; P Schmieder
Journal:  J Magn Reson       Date:  2001-12       Impact factor: 2.229

2.  A novel approach for the sequential backbone assignment of larger proteins: selective intra-HNCA and DQ-HNCA.

Authors:  Daniel Nietlispach; Yutaka Ito; Ernest D Laue
Journal:  J Am Chem Soc       Date:  2002-09-18       Impact factor: 15.419

3.  Amino acid type identification in NMR spectra of proteins via beta- and gamma-carbon edited experiments.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Magn Reson       Date:  2008-09-17       Impact factor: 2.229

4.  Phase labeling of C-H and C-C spin-system topologies: application in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments for determining backbone resonance assignments in proteins.

Authors:  W Feng; C B Rios; G T Montelione
Journal:  J Biomol NMR       Date:  1996-07       Impact factor: 2.835

5.  Amino-acid-type identification for deuterated proteins with a beta-carbon-edited HNCOCACB experiment.

Authors:  V Dötsch; H Matsuo; G Wagner
Journal:  J Magn Reson B       Date:  1996-07

6.  Expression and nitrogen-15 labeling of proteins for proton and nitrogen-15 nuclear magnetic resonance.

Authors:  D C Muchmore; L P McIntosh; C B Russell; D E Anderson; F W Dahlquist
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

7.  Amino-acid-type-selective triple-resonance experiments.

Authors:  V Dötsch; R E Oswald; G Wagner
Journal:  J Magn Reson B       Date:  1996-01

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Phase labeling of C-H and C-C spin-system topologies: application in constant-time PFG-CBCA(CO)NH experiments for discriminating amino acid spin-system types.

Authors:  C B Rios; W Feng; M Tashiro; Z Shang; G T Montelione
Journal:  J Biomol NMR       Date:  1996-10       Impact factor: 2.835

10.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

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  3 in total

1.  High-dimensionality 13C direct-detected NMR experiments for the automatic assignment of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2013-11-08       Impact factor: 2.835

2.  Deciphering the binding between Nupr1 and MSL1 and their DNA-repairing activity.

Authors:  David Aguado-Llera; Tewfik Hamidi; Rosa Doménech; David Pantoja-Uceda; Meritxell Gironella; Jorge Santoro; Adrián Velázquez-Campoy; José L Neira; Juan L Iovanna
Journal:  PLoS One       Date:  2013-10-30       Impact factor: 3.240

3.  Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins.

Authors:  Alessandro Piai; Leonardo Gonnelli; Isabella C Felli; Roberta Pierattelli; Krzysztof Kazimierczuk; Katarzyna Grudziąż; Wiktor Koźmiński; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2016-02-18       Impact factor: 2.835

  3 in total

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