Literature DB >> 28203039

Quality Assurance using Outlier Detection on an Automatic Segmentation Method for the Cerebellar Peduncles.

Ke Li1, Chuyang Ye2, Zhen Yang1, Aaron Carass1, Sarah H Ying3, Jerry L Prince1.   

Abstract

Cerebellar peduncles (CPs) are white matter tracts connecting the cerebellum to other brain regions. Automatic segmentation methods of the CPs have been proposed for studying their structure and function. Usually the performance of these methods is evaluated by comparing segmentation results with manual delineations (ground truth). However, when a segmentation method is run on new data (for which no ground truth exists) it is highly desirable to efficiently detect and assess algorithm failures so that these cases can be excluded from scientific analysis. In this work, two outlier detection methods aimed to assess the performance of an automatic CP segmentation algorithm are presented. The first one is a univariate non-parametric method using a box-whisker plot. We first categorize automatic segmentation results of a dataset of diffusion tensor imaging (DTI) scans from 48 subjects as either a success or a failure. We then design three groups of features from the image data of nine categorized failures for failure detection. Results show that most of these features can efficiently detect the true failures. The second method-supervised classification-was employed on a larger DTI dataset of 249 manually categorized subjects. Four classifiers-linear discriminant analysis (LDA), logistic regression (LR), support vector machine (SVM), and random forest classification (RFC)-were trained using the designed features and evaluated using a leave-one-out cross validation. Results show that the LR performs worst among the four classifiers and the other three perform comparably, which demonstrates the feasibility of automatically detecting segmentation failures using classification methods.

Entities:  

Keywords:  box-whisker plot; cerebellar peduncles; classification; outlier detection; quality assurance; segmentation

Year:  2016        PMID: 28203039      PMCID: PMC5304449          DOI: 10.1117/12.2217309

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  7 in total

Review 1.  Diffusion tensor imaging: concepts and applications.

Authors:  D Le Bihan; J F Mangin; C Poupon; C A Clark; S Pappata; N Molko; H Chabriat
Journal:  J Magn Reson Imaging       Date:  2001-04       Impact factor: 4.813

2.  A diffusion tensor imaging study of the cerebellar pathways in children with autism spectrum disorder.

Authors:  Lalitha Sivaswamy; Ajay Kumar; Deepa Rajan; Michael Behen; Otto Muzik; Diane Chugani; Harry Chugani
Journal:  J Child Neurol       Date:  2010-02-22       Impact factor: 1.987

3.  Direct segmentation of the major white matter tracts in diffusion tensor images.

Authors:  Pierre-Louis Bazin; Chuyang Ye; John A Bogovic; Navid Shiee; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage       Date:  2011-06-21       Impact factor: 6.556

4.  SEGMENTATION OF THE COMPLETE SUPERIOR CEREBELLAR PEDUNCLES USING A MULTI-OBJECT GEOMETRIC DEFORMABLE MODEL.

Authors:  Chuyang Ye; John A Bogovic; Sarah H Ying; Jerry L Prince
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2013-12-31

5.  Segmentation of the Cerebellar Peduncles Using a Random Forest Classifier and a Multi-object Geometric Deformable Model: Application to Spinocerebellar Ataxia Type 6.

Authors:  Chuyang Ye; Zhen Yang; Sarah H Ying; Jerry L Prince
Journal:  Neuroinformatics       Date:  2015-07

6.  Improved segmentation of white matter tracts with adaptive Riemannian metrics.

Authors:  Xiang Hao; Kristen Zygmunt; Ross T Whitaker; P Thomas Fletcher
Journal:  Med Image Anal       Date:  2013-10-25       Impact factor: 8.545

7.  Identifying white-matter fiber bundles in DTI data using an automated proximity-based fiber-clustering method.

Authors:  Song Zhang; Stephen Correia; David H Laidlaw
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Sep-Oct       Impact factor: 4.579

  7 in total
  1 in total

1.  Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.

Authors:  Aaron Carass; Jennifer L Cuzzocreo; Shuo Han; Carlos R Hernandez-Castillo; Paul E Rasser; Melanie Ganz; Vincent Beliveau; Jose Dolz; Ismail Ben Ayed; Christian Desrosiers; Benjamin Thyreau; José E Romero; Pierrick Coupé; José V Manjón; Vladimir S Fonov; D Louis Collins; Sarah H Ying; Chiadi U Onyike; Deana Crocetti; Bennett A Landman; Stewart H Mostofsky; Paul M Thompson; Jerry L Prince
Journal:  Neuroimage       Date:  2018-08-09       Impact factor: 6.556

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.