Literature DB >> 23631987

Fiber clustering versus the parcellation-based connectome.

Lauren J O'Donnell1, Alexandra J Golby, Carl-Fredrik Westin.   

Abstract

We compare two strategies for modeling the connections of the brain's white matter: fiber clustering and the parcellation-based connectome. Both methods analyze diffusion magnetic resonance imaging fiber tractography to produce a quantitative description of the brain's connections. Fiber clustering is designed to reconstruct anatomically-defined white matter tracts, while the parcellation-based white matter segmentation enables the study of the brain as a network. From the perspective of white matter segmentation, we compare and contrast the goals and methods of the parcellation-based and clustering approaches, with special focus on reviewing the field of fiber clustering. We also propose a third category of new hybrid methods that combine the aspects of parcellation and clustering, for joint analysis of connection structure and anatomy or function. We conclude that these different approaches for segmentation and modeling of the white matter can advance the neuroscientific study of the brain's connectivity in complementary ways.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Clustering; DTI; Diffusion MRI; Segmentation; White matter

Mesh:

Year:  2013        PMID: 23631987      PMCID: PMC3731058          DOI: 10.1016/j.neuroimage.2013.04.066

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  84 in total

Review 1.  Processing and visualization for diffusion tensor MRI.

Authors:  C-F Westin; S E Maier; H Mamata; A Nabavi; F A Jolesz; R Kikinis
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

2.  Connectivity-Based Parcellation of Broca's Area.

Authors:  A Anwander; M Tittgemeyer; D Y von Cramon; A D Friederici; T R Knösche
Journal:  Cereb Cortex       Date:  2006-05-17       Impact factor: 5.357

3.  Resting-state functional connectivity reflects structural connectivity in the default mode network.

Authors:  Michael D Greicius; Kaustubh Supekar; Vinod Menon; Robert F Dougherty
Journal:  Cereb Cortex       Date:  2008-04-09       Impact factor: 5.357

4.  Diffusion tensor tractography findings in schizophrenia across the adult lifespan.

Authors:  Aristotle N Voineskos; Nancy J Lobaugh; Sylvain Bouix; Tarek K Rajji; Dielle Miranda; James L Kennedy; Benoit H Mulsant; Bruce G Pollock; Martha E Shenton
Journal:  Brain       Date:  2010-03-17       Impact factor: 13.501

5.  The geometric structure of the brain fiber pathways.

Authors:  Van J Wedeen; Douglas L Rosene; Ruopeng Wang; Guangping Dai; Farzad Mortazavi; Patric Hagmann; Jon H Kaas; Wen-Yih I Tseng
Journal:  Science       Date:  2012-03-30       Impact factor: 47.728

6.  Human cortical connectome reconstruction from diffusion weighted MRI: the effect of tractography algorithm.

Authors:  Matteo Bastiani; Nadim Jon Shah; Rainer Goebel; Alard Roebroeck
Journal:  Neuroimage       Date:  2012-06-12       Impact factor: 6.556

7.  Unsupervised white matter fiber clustering and tract probability map generation: applications of a Gaussian process framework for white matter fibers.

Authors:  D Wassermann; L Bloy; E Kanterakis; R Verma; R Deriche
Journal:  Neuroimage       Date:  2010-01-14       Impact factor: 6.556

8.  Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography.

Authors:  Aristotle N Voineskos; Lauren J O'Donnell; Nancy J Lobaugh; Doug Markant; Stephanie H Ameis; Marc Niethammer; Benoit H Mulsant; Bruce G Pollock; James L Kennedy; Carl Fredrik Westin; Martha E Shenton
Journal:  Neuroimage       Date:  2008-12-29       Impact factor: 6.556

9.  Tract-based morphometry for white matter group analysis.

Authors:  Lauren J O'Donnell; Carl-Fredrik Westin; Alexandra J Golby
Journal:  Neuroimage       Date:  2008-12-25       Impact factor: 6.556

10.  Connectivity-based parcellation of human cortex using diffusion MRI: Establishing reproducibility, validity and observer independence in BA 44/45 and SMA/pre-SMA.

Authors:  Johannes C Klein; Timothy E J Behrens; Matthew D Robson; Clare E Mackay; Desmond J Higham; Heidi Johansen-Berg
Journal:  Neuroimage       Date:  2006-10-03       Impact factor: 6.556

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  31 in total

1.  Evaluating arcuate fasciculus laterality measurements across dataset and tractography pipelines.

Authors:  Jonathan S Bain; Jason D Yeatman; Roey Schurr; Ariel Rokem; Aviv A Mezer
Journal:  Hum Brain Mapp       Date:  2019-05-20       Impact factor: 5.038

Review 2.  Advances in computational and statistical diffusion MRI.

Authors:  Lauren J O'Donnell; Alessandro Daducci; Demian Wassermann; Christophe Lenglet
Journal:  NMR Biomed       Date:  2017-11-14       Impact factor: 4.044

3.  Group-wise consistent cortical parcellation based on connectional profiles.

Authors:  Tuo Zhang; Dajiang Zhu; Xi Jiang; Shu Zhang; Zhifeng Kou; Lei Guo; Tianming Liu
Journal:  Med Image Anal       Date:  2016-03-14       Impact factor: 8.545

4.  Parametrization of white matter manifold-like structures using principal surfaces.

Authors:  Chen Yue; Vadim Zipunnikov; Pierre-Louis Bazin; Dzung Pham; Daniel Reich; Ciprian Crainiceanu; Brian Caffo
Journal:  J Am Stat Assoc       Date:  2016-10-18       Impact factor: 5.033

Review 5.  Does diffusion MRI tell us anything about the white matter? An overview of methods and pitfalls.

Authors:  Lauren J O'Donnell; Ofer Pasternak
Journal:  Schizophr Res       Date:  2014-09-29       Impact factor: 4.939

6.  A comparison of three fiber tract delineation methods and their impact on white matter analysis.

Authors:  Valerie J Sydnor; Ana María Rivas-Grajales; Amanda E Lyall; Fan Zhang; Sylvain Bouix; Sarina Karmacharya; Martha E Shenton; Carl-Fredrik Westin; Nikos Makris; Demian Wassermann; Lauren J O'Donnell; Marek Kubicki
Journal:  Neuroimage       Date:  2018-05-19       Impact factor: 6.556

7.  Automated tract extraction via atlas based Adaptive Clustering.

Authors:  Birkan Tunç; William A Parker; Madhura Ingalhalikar; Ragini Verma
Journal:  Neuroimage       Date:  2014-08-15       Impact factor: 6.556

8.  Mapping population-based structural connectomes.

Authors:  Zhengwu Zhang; Maxime Descoteaux; Jingwen Zhang; Gabriel Girard; Maxime Chamberland; David Dunson; Anuj Srivastava; Hongtu Zhu
Journal:  Neuroimage       Date:  2018-02-03       Impact factor: 6.556

Review 9.  Functional connectomics from resting-state fMRI.

Authors:  Stephen M Smith; Diego Vidaurre; Christian F Beckmann; Matthew F Glasser; Mark Jenkinson; Karla L Miller; Thomas E Nichols; Emma C Robinson; Gholamreza Salimi-Khorshidi; Mark W Woolrich; Deanna M Barch; Kamil Uğurbil; David C Van Essen
Journal:  Trends Cogn Sci       Date:  2013-11-12       Impact factor: 20.229

10.  Whole brain white matter connectivity analysis using machine learning: An application to autism.

Authors:  Fan Zhang; Peter Savadjiev; Weidong Cai; Yang Song; Yogesh Rathi; Birkan Tunç; Drew Parker; Tina Kapur; Robert T Schultz; Nikos Makris; Ragini Verma; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2017-10-25       Impact factor: 6.556

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