Literature DB >> 18572936

Oxygen reactivity of the biferrous site in the de novo designed four helix bundle peptide DFsc: nature of the "intermediate" and reaction mechanism.

Jennifer R Calhoun1, Caleb B Bell, Thomas J Smith, Thomas J Thamann, William F DeGrado, Edward I Solomon.   

Abstract

The DFsc and DFscE11D de novo designed protein scaffolds support biomimetic diiron cofactor sites that react with dioxygen forming a 520 nm "intermediate" species with an apparent pseudo-first-order formation rate constant of 2.2 and 4.8 s-1, respectively. Resonance Raman spectroscopy shows that this absorption feature is due to a phenolate-to-ferric charge transfer transition arising from a single tyrosine residue coordinating terminally to one of the ferric ions in the site. Phenol coordination could provide a proton to promote rapid loss of a putative peroxo species.

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Year:  2008        PMID: 18572936      PMCID: PMC3810014          DOI: 10.1021/ja801657y

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

1.  Geometric and electronic structure/function correlations in non-heme iron enzymes.

Authors:  E I Solomon; T C Brunold; M I Davis; J N Kemsley; S K Lee; N Lehnert; F Neese; A J Skulan; Y S Yang; J Zhou
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

2.  Computational de novo design, and characterization of an A(2)B(2) diiron protein.

Authors:  Christopher M Summa; Michael M Rosenblatt; Jae-Kyoung Hong; James D Lear; William F DeGrado
Journal:  J Mol Biol       Date:  2002-08-30       Impact factor: 5.469

3.  Dioxygen activation at non-heme diiron centers: characterization of intermediates in a mutant form of toluene/o-xylene monooxygenase hydroxylase.

Authors:  Leslie J Murray; Ricardo García-Serres; Sunil Naik; Boi Hanh Huynh; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

4.  Artificial diiron proteins: from structure to function.

Authors:  Jennifer R Calhoun; Flavia Nastri; Ornella Maglio; Vincenzo Pavone; Angela Lombardi; William F DeGrado
Journal:  Biopolymers       Date:  2005       Impact factor: 2.505

5.  Characterization of pink and purple uteroferrin by resonance Raman and CD spectroscopy.

Authors:  B C Antanaitis; T Strekas; P Aisen
Journal:  J Biol Chem       Date:  1982-04-10       Impact factor: 5.157

6.  Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor.

Authors:  Frank V Cochran; Sophia P Wu; Wei Wang; Vikas Nanda; Jeffery G Saven; Michael J Therien; William F DeGrado
Journal:  J Am Chem Soc       Date:  2005-02-09       Impact factor: 15.419

7.  Dioxygen Activation and Methane Hydroxylation by Soluble Methane Monooxygenase: A Tale of Two Irons and Three Proteins A list of abbreviations can be found in Section 7.

Authors:  Maarten Merkx; Daniel A. Kopp; Matthew H. Sazinsky; Jessica L. Blazyk; Jens Müller; Stephen J. Lippard
Journal:  Angew Chem Int Ed Engl       Date:  2001-08-03       Impact factor: 15.336

8.  Crystal structural studies of changes in the native dinuclear iron center of ribonucleotide reductase protein R2 from mouse.

Authors:  Kari R Strand; Solveig Karlsen; Matthias Kolberg; Asmund Kjendseth Røhr; Carl Henrik Görbitz; K Kristoffer Andersson
Journal:  J Biol Chem       Date:  2004-08-17       Impact factor: 5.157

9.  Solution NMR structure of a designed metalloprotein and complementary molecular dynamics refinement.

Authors:  Jennifer R Calhoun; Weixia Liu; Katrin Spiegel; Matteo Dal Peraro; Michael L Klein; Kathleen G Valentine; A Joshua Wand; William F DeGrado
Journal:  Structure       Date:  2008-02       Impact factor: 5.006

10.  Formation of iron(III)-tyrosinate is the fastest reaction observed in ferritin.

Authors:  G S Waldo; E C Theil
Journal:  Biochemistry       Date:  1993-12-07       Impact factor: 3.162

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  13 in total

1.  DNA targeting and cleavage by an engineered metalloprotein dimer.

Authors:  Siu Wah Wong-Deyrup; Charulata Prasannan; Cynthia M Dupureur; Sonya J Franklin
Journal:  J Biol Inorg Chem       Date:  2011-11-25       Impact factor: 3.358

2.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

3.  Artificial Diiron Enzymes with a De Novo Designed Four-Helix Bundle Structure.

Authors:  Marco Chino; Ornella Maglio; Flavia Nastri; Vincenzo Pavone; William F DeGrado; Angela Lombardi
Journal:  Eur J Inorg Chem       Date:  2015-07-06       Impact factor: 2.524

4.  Systematic Perturbations of Binuclear Non-heme Iron Sites: Structure and Dioxygen Reactivity of de Novo Due Ferri Proteins.

Authors:  Rae Ana Snyder; Justine Betzu; Susan E Butch; Amanda J Reig; William F DeGrado; Edward I Solomon
Journal:  Biochemistry       Date:  2015-07-24       Impact factor: 3.162

Review 5.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

6.  Spectroscopic and metal-binding properties of DF3: an artificial protein able to accommodate different metal ions.

Authors:  Rafael Torres Martin de Rosales; Marina Faiella; Erik Farquhar; Lawrence Que; Concetta Andreozzi; Vincenzo Pavone; Ornella Maglio; Flavia Nastri; Angela Lombardi
Journal:  J Biol Inorg Chem       Date:  2010-03-12       Impact factor: 3.358

7.  Molecular-Level Insight into the Differential Oxidase and Oxygenase Reactivities of de Novo Due Ferri Proteins.

Authors:  Rae Ana Snyder; Susan E Butch; Amanda J Reig; William F DeGrado; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2015-07-15       Impact factor: 15.419

8.  Spectroscopic definition of the biferrous and biferric sites in de novo designed four-helix bundle DFsc peptides: implications for O2 reactivity of binuclear non-heme iron enzymes.

Authors:  Caleb B Bell; Jennifer R Calhoun; Elena Bobyr; Pin-Pin Wei; Britt Hedman; Keith O Hodgson; William F Degrado; Edward I Solomon
Journal:  Biochemistry       Date:  2009-01-13       Impact factor: 3.162

Review 9.  Design of functional metalloproteins.

Authors:  Yi Lu; Natasha Yeung; Nathan Sieracki; Nicholas M Marshall
Journal:  Nature       Date:  2009-08-13       Impact factor: 49.962

10.  Uno Ferro, a de novo Designed Protein, Binds Transition Metals with High Affinity and Stabilizes Semiquinone Radical Anion.

Authors:  Jennifer H Yoon; Alona V Kulesha; Zsofia Lengyel-Zhand; Alexander N Volkov; Joel J Rempillo; Areetha D'Souza; Christos Costeas; Cara Chester; Elizabeth R Caselle; Olga V Makhlynets
Journal:  Chemistry       Date:  2019-10-31       Impact factor: 5.236

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