Literature DB >> 26090726

Molecular-Level Insight into the Differential Oxidase and Oxygenase Reactivities of de Novo Due Ferri Proteins.

Rae Ana Snyder1, Susan E Butch2, Amanda J Reig2, William F DeGrado3, Edward I Solomon1,4.   

Abstract

Using the single-chain due ferri (DFsc) peptide scaffold, the differential oxidase and oxygenase reactivities of two 4A→4G variants, one with two histidines at the diiron center (G4DFsc) and the other with three histidines (3His-G4DFsc(Mut3)), are explored. By controlling the reaction conditions, the active form responsible for 4-aminophenol (4-AP) oxidase activity in both G4DFsc and 3His-G4DFsc(Mut3) is determined to be the substrate-bound biferrous site. Using circular dichroism (CD), magnetic CD (MCD), and variable-temperature, variable-field (VTVH) MCD spectroscopies, 4-AP is found to bind directly to the biferrous sites of the DF proteins. In G4DFsc, 4-AP increases the coordination of the biferrous site, while in 3His-G4DFsc(Mut3), the coordination number remains the same and the substrate likely replaces the additional bound histidine. This substrate binding enables a two-electron process where 4-AP is oxidized to benzoquinone imine and O2 is reduced to H2O2. In contrast, only the biferrous 3His variant is found to be active in the oxygenation of p-anisidine to 4-nitroso-methoxybenzene. From CD, MCD, and VTVH MCD, p-anisidine addition is found to minimally perturb the biferrous centers of both G4DFsc and 3His-G4DFsc(Mut3), indicating that this substrate binds near the biferrous site. In 3His-G4DFsc(Mut3), the coordinative saturation of one iron leads to the two-electron reduction of O2 at the second iron to generate an end-on hydroperoxo-Fe(III) active oxygenating species.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26090726      PMCID: PMC4843592          DOI: 10.1021/jacs.5b03524

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  45 in total

1.  Dioxygen activation at non-heme diiron centers: characterization of intermediates in a mutant form of toluene/o-xylene monooxygenase hydroxylase.

Authors:  Leslie J Murray; Ricardo García-Serres; Sunil Naik; Boi Hanh Huynh; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

2.  A new class of arylamine oxygenases: evidence that p-aminobenzoate N-oxygenase (AurF) is a di-iron enzyme and further mechanistic studies.

Authors:  Michael Simurdiak; Jungkul Lee; Huimin Zhao
Journal:  Chembiochem       Date:  2006-08       Impact factor: 3.164

3.  (Mu-1,2-peroxo)diiron(III/III) complex as a precursor to the diiron(III/IV) intermediate X in the assembly of the iron-radical cofactor of ribonucleotide reductase from mouse.

Authors:  Danny Yun; Ricardo García-Serres; Brandon M Chicalese; Young H An; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2007-01-27       Impact factor: 3.162

4.  Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site.

Authors:  D A Whittington; S J Lippard
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

Review 5.  Dioxygen activation in soluble methane monooxygenase.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2011-03-10       Impact factor: 22.384

6.  Insights into the nitric oxide reductase mechanism of flavodiiron proteins from a flavin-free enzyme.

Authors:  Takahiro Hayashi; Jonathan D Caranto; David A Wampler; Donald M Kurtz; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2010-08-24       Impact factor: 3.162

7.  Solution NMR structure of a designed metalloprotein and complementary molecular dynamics refinement.

Authors:  Jennifer R Calhoun; Weixia Liu; Katrin Spiegel; Matteo Dal Peraro; Michael L Klein; Kathleen G Valentine; A Joshua Wand; William F DeGrado
Journal:  Structure       Date:  2008-02       Impact factor: 5.006

8.  CD and MCD studies of the effects of component B variant binding on the biferrous active site of methane monooxygenase.

Authors:  Natasa Mitić; Jennifer K Schwartz; Brian J Brazeau; John D Lipscomb; Edward I Solomon
Journal:  Biochemistry       Date:  2008-07-16       Impact factor: 3.162

Review 9.  Biochemistry of the soluble methane monooxygenase.

Authors:  J D Lipscomb
Journal:  Annu Rev Microbiol       Date:  1994       Impact factor: 15.500

10.  Electronic and spectroscopic studies of the non-heme reduced binuclear iron sites of two ribonucleotide reductase variants: comparison to reduced methane monooxygenase and contributions to O2 reactivity.

Authors:  Pin-Pin Wei; Andrew J Skulan; Natasa Mitić; Yi-Shan Yang; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

View more
  7 in total

Review 1.  Design and engineering of artificial oxygen-activating metalloenzymes.

Authors:  Flavia Nastri; Marco Chino; Ornella Maglio; Ambika Bhagi-Damodaran; Yi Lu; Angela Lombardi
Journal:  Chem Soc Rev       Date:  2016-06-24       Impact factor: 54.564

Review 2.  Design of artificial metalloproteins/metalloenzymes by tuning noncovalent interactions.

Authors:  Shun Hirota; Ying-Wu Lin
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

3.  De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.

Authors:  Shao-Qing Zhang; Marco Chino; Lijun Liu; Youzhi Tang; Xiaozhen Hu; William F DeGrado; Angela Lombardi
Journal:  J Am Chem Soc       Date:  2018-01-22       Impact factor: 15.419

4.  Spectroscopic and metal binding properties of a de novo metalloprotein binding a tetrazinc cluster.

Authors:  Marco Chino; Shao-Qing Zhang; Fabio Pirro; Linda Leone; Ornella Maglio; Angela Lombardi; William F DeGrado
Journal:  Biopolymers       Date:  2018-09-11       Impact factor: 2.505

Review 5.  Designed for life: biocompatible de novo designed proteins and components.

Authors:  Katie J Grayson; J L Ross Anderson
Journal:  J R Soc Interface       Date:  2018-08       Impact factor: 4.118

Review 6.  The ascent of man(made oxidoreductases).

Authors:  Katie J Grayson; Jl Ross Anderson
Journal:  Curr Opin Struct Biol       Date:  2018-05-10       Impact factor: 6.809

7.  A de novo peroxidase is also a promiscuous yet stereoselective carbene transferase.

Authors:  Richard Stenner; Jack W Steventon; Annela Seddon; J L Ross Anderson
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-02       Impact factor: 11.205

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.