Literature DB >> 31509280

Uno Ferro, a de novo Designed Protein, Binds Transition Metals with High Affinity and Stabilizes Semiquinone Radical Anion.

Jennifer H Yoon1, Alona V Kulesha1, Zsofia Lengyel-Zhand1, Alexander N Volkov2,3, Joel J Rempillo1, Areetha D'Souza1, Christos Costeas1, Cara Chester1, Elizabeth R Caselle1, Olga V Makhlynets1.   

Abstract

Metalloenzymes often utilize radicals in order to facilitate chemical reactions. Recently, DeGrado and co-workers have discovered that model proteins can efficiently stabilize semiquinone radical anion produced by oxidation of 3,5-di-tert-butylcatechol (DTBC) in the presence of two zinc ions. Here, we show that the number and the nature of metal ions have relatively minor effect on semiquinone stabilization in model proteins, with a single metal ion being sufficient for radical stabilization. The radical is stabilized by both metal ion, hydrophobic sequestration, and interactions with the hydrophilic residues in the protein interior resulting in a remarkable, nearly 500 mV change in the redox potential of the SQ. - /catechol couple compared to bulk aqueous solution. Moreover, we have created 4G-UFsc, a single metal ion-binding protein with pm affinity for zinc that is higher than any other reported model systems and is on par with many natural zinc-containing proteins. We expect that the robust and easy-to-modify DFsc/UFsc family of proteins will become a versatile tool for mechanistic model studies of metalloenzymes.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  catechol dioxygenase; metal binding; protein NMR; protein design; semiquinone radical anion

Mesh:

Substances:

Year:  2019        PMID: 31509280      PMCID: PMC6891133          DOI: 10.1002/chem.201904020

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  32 in total

1.  Artificial diiron proteins: from structure to function.

Authors:  Jennifer R Calhoun; Flavia Nastri; Ornella Maglio; Vincenzo Pavone; Angela Lombardi; William F DeGrado
Journal:  Biopolymers       Date:  2005       Impact factor: 2.505

2.  Moving a phenol hydroxyl group from the surface to the interior of a protein: effects on the phenol potential and pK(A).

Authors:  Sam Hay; Kristina Westerlund; Cecilia Tommos
Journal:  Biochemistry       Date:  2005-09-06       Impact factor: 3.162

Review 3.  Protein design, a minimalist approach.

Authors:  W F DeGrado; Z R Wasserman; J D Lear
Journal:  Science       Date:  1989-02-03       Impact factor: 47.728

4.  Semiquinone anion radicals from addition of amino acids, peptides, and proteins to quinones derived from oxidation of catechols and catecholamines. An ESR spin stabilization study.

Authors:  B Kalyanaraman; P I Premovic; R C Sealy
Journal:  J Biol Chem       Date:  1987-08-15       Impact factor: 5.157

5.  Solution NMR structure of a designed metalloprotein and complementary molecular dynamics refinement.

Authors:  Jennifer R Calhoun; Weixia Liu; Katrin Spiegel; Matteo Dal Peraro; Michael L Klein; Kathleen G Valentine; A Joshua Wand; William F DeGrado
Journal:  Structure       Date:  2008-02       Impact factor: 5.006

6.  Reversible phenol oxidation and reduction in the structurally well-defined 2-Mercaptophenol-α₃C protein.

Authors:  Cecilia Tommos; Kathleen G Valentine; Melissa C Martínez-Rivera; Li Liang; Veronica R Moorman
Journal:  Biochemistry       Date:  2013-02-14       Impact factor: 3.162

7.  An artificial di-iron oxo-protein with phenol oxidase activity.

Authors:  Marina Faiella; Concetta Andreozzi; Rafael Torres Martin de Rosales; Vincenzo Pavone; Ornella Maglio; Flavia Nastri; William F DeGrado; Angela Lombardi
Journal:  Nat Chem Biol       Date:  2009-11-08       Impact factor: 15.040

8.  Designed metalloprotein stabilizes a semiquinone radical.

Authors:  Gözde Ulas; Thomas Lemmin; Yibing Wu; George T Gassner; William F DeGrado
Journal:  Nat Chem       Date:  2016-02-15       Impact factor: 24.427

9.  Computational design and characterization of a monomeric helical dinuclear metalloprotein.

Authors:  Jennifer R Calhoun; Hidetoshi Kono; Steven Lahr; Wei Wang; William F DeGrado; Jeffery G Saven
Journal:  J Mol Biol       Date:  2003-12-12       Impact factor: 5.469

10.  Artificial Metalloproteins for Binding and Stabilization of a Semiquinone Radical.

Authors:  Nathalie Ségaud; Ivana Drienovská; Juan Chen; Wesley R Browne; Gerard Roelfes
Journal:  Inorg Chem       Date:  2017-11-06       Impact factor: 5.165

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  1 in total

1.  De novo metalloprotein design.

Authors:  Matthew J Chalkley; Samuel I Mann; William F DeGrado
Journal:  Nat Rev Chem       Date:  2021-12-06       Impact factor: 34.571

  1 in total

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