Literature DB >> 18567812

3'-cyclic phosphorylation of U6 snRNA leads to recruitment of recycling factor p110 through LSm proteins.

Konstantin Licht1, Jan Medenbach, Reinhard Lührmann, Christian Kambach, Albrecht Bindereif.   

Abstract

Pre-mRNA splicing proceeds through assembly of the spliceosome complex, catalysis, and recycling. During each cycle the U4/U6.U5 tri-snRNP is disrupted and U4/U6 snRNA base-pairing unwound, releasing separate post-spliceosomal U4, U5, and U6 snRNPs, which have to be recycled to the splicing-competent tri-snRNP. Previous work implicated p110--the human ortholog of the yeast Prp24 protein--and the LSm2-8 proteins of the U6 snRNP in U4/U6 recycling. Here we show in vitro that these proteins bind synergistically to U6 snRNA: Both purified and recombinant LSm2-8 proteins are able to recruit p110 protein to U6 snRNA via interaction with the highly conserved C-terminal region of p110. Furthermore, the presence of a 2',3'-cyclic phosphate enhances the affinity of U6 snRNA for the LSm2-8 proteins and inversely reduces La protein binding, suggesting a direct role of the 3'-terminal phosphorylation in RNP remodeling during U6 biogenesis.

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Year:  2008        PMID: 18567812      PMCID: PMC2491463          DOI: 10.1261/rna.1129608

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  38 in total

1.  Characterization of U6 snRNA-protein interactions.

Authors:  V P Vidal; L Verdone; A E Mayes; J D Beggs
Journal:  RNA       Date:  1999-11       Impact factor: 4.942

Review 2.  Spliceosomal UsnRNP biogenesis, structure and function.

Authors:  C L Will; R Lührmann
Journal:  Curr Opin Cell Biol       Date:  2001-06       Impact factor: 8.382

Review 3.  Allosteric cascade of spliceosome activation.

Authors:  David A Brow
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

4.  Reconstitution of two recombinant LSm protein complexes reveals aspects of their architecture, assembly, and function.

Authors:  Bozidarka Zaric; Mohamed Chami; Hervé Rémigy; Andreas Engel; Kurt Ballmer-Hofer; Fritz K Winkler; Christian Kambach
Journal:  J Biol Chem       Date:  2005-02-11       Impact factor: 5.157

5.  Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa.

Authors:  Kazimierz T Tycowski; Alar Aab; Joan A Steitz
Journal:  Curr Biol       Date:  2004-11-23       Impact factor: 10.834

Review 6.  LSm proteins form heptameric rings that bind to RNA via repeating motifs.

Authors:  Permanan Khusial; Robert Plaag; Gary W Zieve
Journal:  Trends Biochem Sci       Date:  2005-09       Impact factor: 13.807

7.  p110, a novel human U6 snRNP protein and U4/U6 snRNP recycling factor.

Authors:  Mathias Bell; Silke Schreiner; Andrey Damianov; Ram Reddy; Albrecht Bindereif
Journal:  EMBO J       Date:  2002-06-03       Impact factor: 11.598

8.  Characterization of Sm-like proteins in yeast and their association with U6 snRNA.

Authors:  A E Mayes; L Verdone; P Legrain; J D Beggs
Journal:  EMBO J       Date:  1999-08-02       Impact factor: 11.598

9.  Transient nucleolar localization Of U6 small nuclear RNA in Xenopus Laevis oocytes.

Authors:  T S Lange; S A Gerbi
Journal:  Mol Biol Cell       Date:  2000-07       Impact factor: 4.138

10.  Isolation of an active step I spliceosome and composition of its RNP core.

Authors:  Sergey Bessonov; Maria Anokhina; Cindy L Will; Henning Urlaub; Reinhard Lührmann
Journal:  Nature       Date:  2008-03-05       Impact factor: 49.962

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  27 in total

1.  Selective amplification and sequencing of cyclic phosphate-containing RNAs by the cP-RNA-seq method.

Authors:  Shozo Honda; Keisuke Morichika; Yohei Kirino
Journal:  Nat Protoc       Date:  2016-02-11       Impact factor: 13.491

Review 2.  The role of 3' end uridylation in RNA metabolism and cellular physiology.

Authors:  Dagmar Zigáčková; Štěpánka Vaňáčová
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

3.  A bird's-eye view of post-translational modifications in the spliceosome and their roles in spliceosome dynamics.

Authors:  Susannah L McKay; Tracy L Johnson
Journal:  Mol Biosyst       Date:  2010-07-29

Review 4.  3' processing of eukaryotic precursor tRNAs.

Authors:  Richard J Maraia; Tek N Lamichhane
Journal:  Wiley Interdiscip Rev RNA       Date:  2011 May-Jun       Impact factor: 9.957

Review 5.  Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation.

Authors:  Hironori Adachi; Yi-Tao Yu
Journal:  World J Biol Chem       Date:  2014-11-26

6.  Structure-activity relationships in human RNA 3'-phosphate cyclase.

Authors:  Naoko Tanaka; Stewart Shuman
Journal:  RNA       Date:  2009-08-18       Impact factor: 4.942

7.  Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates.

Authors:  Kevin Schutz; Jay R Hesselberth; Stanley Fields
Journal:  RNA       Date:  2010-01-14       Impact factor: 4.942

8.  Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA.

Authors:  Lijun Zhou; Jing Hang; Yulin Zhou; Ruixue Wan; Guifeng Lu; Ping Yin; Chuangye Yan; Yigong Shi
Journal:  Nature       Date:  2013-11-17       Impact factor: 49.962

9.  Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET.

Authors:  John W Hardin; Chandani Warnasooriya; Yasushi Kondo; Kiyoshi Nagai; David Rueda
Journal:  Nucleic Acids Res       Date:  2015-10-25       Impact factor: 16.971

Review 10.  Lsm proteins and Hfq: Life at the 3' end.

Authors:  Carol J Wilusz; Jeffrey Wilusz
Journal:  RNA Biol       Date:  2013-02-07       Impact factor: 4.652

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