Literature DB >> 25426264

Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation.

Hironori Adachi1, Yi-Tao Yu1.   

Abstract

Pseudouridines (Ψs) are the most abundant and highly conserved modified nucleotides found in various stable RNAs of all organisms. Most Ψs are clustered in regions that are functionally important for pre-mRNA splicing. Ψ has an extra hydrogen bond donor that endows RNA molecules with distinct properties that contribute significantly to RNA-mediated cellular processes. Experimental data indicate that spliceosomal snRNA pseudouridylation can be catalyzed by both RNA-dependent and RNA-independent mechanisms. Recent work has also demonstrated that pseudouridylation can be induced at novel positions under stress conditions, suggesting a regulatory role for Ψ.

Entities:  

Keywords:  Box H/ACA ribonucleoprotein; Induced RNA modification; Pre-mRNA splicing; Pseudouridine; U2 snRNA

Year:  2014        PMID: 25426264      PMCID: PMC4243145          DOI: 10.4331/wjbc.v5.i4.398

Source DB:  PubMed          Journal:  World J Biol Chem        ISSN: 1949-8454


  86 in total

1.  Detection and quantitation of RNA base modifications.

Authors:  Xinliang Zhao; Yi-Tao Yu
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

2.  Post-transcriptional modification of spliceosomal RNAs is normal in SMN-deficient cells.

Authors:  Svetlana Deryusheva; Maria Choleza; Adrien Barbarossa; Joseph G Gall; Rémy Bordonné
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3.  Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism.

Authors:  Xiaoju Ma; Chunxing Yang; Andrei Alexandrov; Elizabeth J Grayhack; Isabelle Behm-Ansmant; Yi-Tao Yu
Journal:  EMBO J       Date:  2005-06-16       Impact factor: 11.598

4.  Properties of pseudouridine N1 imino protons located in the major groove of an A-form RNA duplex.

Authors:  K B Hall; L W McLaughlin
Journal:  Nucleic Acids Res       Date:  1992-04-25       Impact factor: 16.971

5.  Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing.

Authors:  Y T Yu; M D Shu; J A Steitz
Journal:  EMBO J       Date:  1998-10-01       Impact factor: 11.598

6.  The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC.

Authors:  J A Berglund; K Chua; N Abovich; R Reed; M Rosbash
Journal:  Cell       Date:  1997-05-30       Impact factor: 41.582

7.  Mutations in U6 snRNA that alter splice site specificity: implications for the active site.

Authors:  C F Lesser; C Guthrie
Journal:  Science       Date:  1993-12-24       Impact factor: 47.728

8.  Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA.

Authors:  S Massenet; Y Motorin; D L Lafontaine; E C Hurt; H Grosjean; C Branlant
Journal:  Mol Cell Biol       Date:  1999-03       Impact factor: 4.272

9.  Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA.

Authors:  R Parker; P G Siliciano; C Guthrie
Journal:  Cell       Date:  1987-04-24       Impact factor: 41.582

10.  Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine.

Authors:  Qing Dai; Robert Fong; Mridusmita Saikia; David Stephenson; Yi-tao Yu; Tao Pan; Joseph A Piccirilli
Journal:  Nucleic Acids Res       Date:  2007-09-18       Impact factor: 16.971

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2.  Pseudouridines on Trypanosoma brucei spliceosomal small nuclear RNAs and their implication for RNA and protein interactions.

Authors:  K Shanmugha Rajan; Tirza Doniger; Smadar Cohen-Chalamish; Dana Chen; Oz Semo; Saurav Aryal; Efrat Glick Saar; Vaibhav Chikne; Doron Gerber; Ron Unger; Christian Tschudi; Shulamit Michaeli
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Review 3.  Cajal body function in genome organization and transcriptome diversity.

Authors:  Iain A Sawyer; David Sturgill; Myong-Hee Sung; Gordon L Hager; Miroslav Dundr
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Review 4.  Posttranscriptional RNA Pseudouridylation.

Authors:  Meemanage D De Zoysa; Yi-Tao Yu
Journal:  Enzymes       Date:  2017-03-11

5.  Transcription of Leishmania major U2 small nuclear RNA gene is directed by extragenic sequences located within a tRNA-like and a tRNA-Ala gene.

Authors:  Saúl Rojas-Sánchez; Elisa Figueroa-Angulo; Rodrigo Moreno-Campos; Luis E Florencio-Martínez; Rebeca G Manning-Cela; Santiago Martínez-Calvillo
Journal:  Parasit Vectors       Date:  2016-07-19       Impact factor: 3.876

6.  Circular RNAs: Diversity of Functions and a Regulatory Nova in Oral Medicine: A Pilot Review.

Authors:  Hong Wang; Cheng Feng; Meng Wang; Shuangyan Yang; Fulan Wei
Journal:  Cell Transplant       Date:  2019-04-04       Impact factor: 4.064

Review 7.  Regulation of RNA Splicing: Aberrant Splicing Regulation and Therapeutic Targets in Cancer.

Authors:  Koji Kitamura; Keisuke Nimura
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Review 8.  The plant epitranscriptome: revisiting pseudouridine and 2'-O-methyl RNA modifications.

Authors:  Muthusamy Ramakrishnan; K Shanmugha Rajan; Sileesh Mullasseri; Sarin Palakkal; Krishnan Kalpana; Anket Sharma; Mingbing Zhou; Kunnummal Kurungara Vinod; Subbiah Ramasamy; Qiang Wei
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9.  Dual nature of pseudouridylation in U2 snRNA: Pus1p-dependent and Pus1p-independent activities in yeasts and higher eukaryotes.

Authors:  Svetlana Deryusheva; Joseph G Gall
Journal:  RNA       Date:  2017-04-21       Impact factor: 4.942

  9 in total

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