Literature DB >> 30397107

The role of 3' end uridylation in RNA metabolism and cellular physiology.

Dagmar Zigáčková1, Štěpánka Vaňáčová2.   

Abstract

Most eukaryotic RNAs are posttranscriptionally modified. The majority of modifications promote RNA maturation, others may regulate function and stability. The 3' terminal non-templated oligouridylation is a widespread modification affecting many cellular RNAs at some stage of their life cycle. It has diverse roles in RNA metabolism. The most prevalent is the regulation of stability and quality control. On the cellular and organismal level, it plays a critical role in a number of pathways, such as cell cycle regulation, cell death, development or viral infection. Defects in uridylation have been linked to several diseases. This review summarizes the current knowledge about the role of the 3' terminal oligo(U)-tailing in biology of various RNAs in eukaryotes and describes key factors involved in these pathways.This article is part of the theme issue '5' and 3' modifications controlling RNA degradation'.
© 2018 The Author(s).

Entities:  

Keywords:  RNA degradation; RNA modification; RNA processing; RNA surveillance; RNA uridylation; tutase

Mesh:

Substances:

Year:  2018        PMID: 30397107      PMCID: PMC6232591          DOI: 10.1098/rstb.2018.0171

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  164 in total

1.  RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro.

Authors:  S D Seiwert; K Stuart
Journal:  Science       Date:  1994-10-07       Impact factor: 47.728

2.  Mixed tailing by TENT4A and TENT4B shields mRNA from rapid deadenylation.

Authors:  Jaechul Lim; Dongwan Kim; Young-Suk Lee; Minju Ha; Mihye Lee; Jinah Yeo; Hyeshik Chang; Jaewon Song; Kwangseog Ahn; V Narry Kim
Journal:  Science       Date:  2018-07-19       Impact factor: 47.728

3.  Terminal Uridylyltransferases Execute Programmed Clearance of Maternal Transcriptome in Vertebrate Embryos.

Authors:  Hyeshik Chang; Jinah Yeo; Jeong-Gyun Kim; Hyunjoon Kim; Jaechul Lim; Mihye Lee; Hyun Ho Kim; Jiyeon Ohk; Hee-Yeon Jeon; Hyunsook Lee; Hosung Jung; Kyu-Won Kim; V Narry Kim
Journal:  Mol Cell       Date:  2018-04-05       Impact factor: 17.970

Review 4.  Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants.

Authors:  Jr-Shiuan Yang; Eric C Lai
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

5.  Cid1, a fission yeast protein required for S-M checkpoint control when DNA polymerase delta or epsilon is inactivated.

Authors:  S W Wang; T Toda; R MacCallum; A L Harris; C Norbury
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

6.  Mammalian GLD-2 homologs are poly(A) polymerases.

Authors:  Jae Eun Kwak; Liaoteng Wang; Scott Ballantyne; Judith Kimble; Marvin Wickens
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-30       Impact factor: 11.205

7.  LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance.

Authors:  Melissa L Wilbert; Stephanie C Huelga; Katannya Kapeli; Thomas J Stark; Tiffany Y Liang; Stella X Chen; Bernice Y Yan; Jason L Nathanson; Kasey R Hutt; Michael T Lovci; Hilal Kazan; Anthony Q Vu; Katlin B Massirer; Quaid Morris; Shawn Hoon; Gene W Yeo
Journal:  Mol Cell       Date:  2012-09-06       Impact factor: 17.970

8.  Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo.

Authors:  Lisa Marcinowski; Mélanie Tanguy; Astrid Krmpotic; Bernd Rädle; Vanda J Lisnić; Lee Tuddenham; Béatrice Chane-Woon-Ming; Zsolt Ruzsics; Florian Erhard; Corinna Benkartek; Marina Babic; Ralf Zimmer; Joanne Trgovcich; Ulrich H Koszinowski; Stipan Jonjic; Sébastien Pfeffer; Lars Dölken
Journal:  PLoS Pathog       Date:  2012-02-09       Impact factor: 6.823

9.  Apoptosis Triggers Specific, Rapid, and Global mRNA Decay with 3' Uridylated Intermediates Degraded by DIS3L2.

Authors:  Marshall P Thomas; Xing Liu; Jennifer Whangbo; Geoffrey McCrossan; Keri B Sanborn; Emre Basar; Michael Walch; Judy Lieberman
Journal:  Cell Rep       Date:  2015-05-07       Impact factor: 9.423

10.  mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome.

Authors:  Marcos Morgan; Christian Much; Monica DiGiacomo; Chiara Azzi; Ivayla Ivanova; Dimitrios M Vitsios; Jelena Pistolic; Paul Collier; Pedro N Moreira; Vladimir Benes; Anton J Enright; Dónal O'Carroll
Journal:  Nature       Date:  2017-08-09       Impact factor: 49.962

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  11 in total

Review 1.  RNA uridylation and decay in plants.

Authors:  Caroline de Almeida; Hélène Scheer; Anthony Gobert; Veronica Fileccia; Federico Martinelli; Hélène Zuber; Dominique Gagliardi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

2.  5' and 3' modifications controlling RNA degradation: from safeguards to executioners.

Authors:  Dominique Gagliardi; Andrzej Dziembowski
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

3.  Synthesis of modified nucleotide polymers by the poly(U) polymerase Cid1: application to direct RNA sequencing on nanopores.

Authors:  Jenny Mai Vo; Logan Mulroney; Jen Quick-Cleveland; Miten Jain; Mark Akeson; Manuel Ares
Journal:  RNA       Date:  2021-08-26       Impact factor: 4.942

4.  Terminal modification, sequence, length, and PIWI-protein identity determine piRNA stability.

Authors:  Ildar Gainetdinov; Cansu Colpan; Katharine Cecchini; Amena Arif; Karina Jouravleva; Paul Albosta; Joel Vega-Badillo; Yongjin Lee; Deniz M Özata; Phillip D Zamore
Journal:  Mol Cell       Date:  2021-10-08       Impact factor: 17.970

5.  Uridylation and the SKI complex orchestrate the Calvin cycle of photosynthesis through RNA surveillance of TKL1 in Arabidopsis.

Authors:  Xiaoyan Wang; Wenwen Kong; Yuan Wang; Jinhui Wang; Luyao Zhong; Kangwen Lao; Xianxin Dong; Dingyu Zhang; He Huang; Beixin Mo; Yu Yu; Guodong Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-12       Impact factor: 12.779

Review 6.  Terminal nucleotidyl transferases (TENTs) in mammalian RNA metabolism.

Authors:  Zbigniew Warkocki; Vladyslava Liudkovska; Olga Gewartowska; Seweryn Mroczek; Andrzej Dziembowski
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

Review 7.  UPF1-Mediated RNA Decay-Danse Macabre in a Cloud.

Authors:  Daria Lavysh; Gabriele Neu-Yilik
Journal:  Biomolecules       Date:  2020-07-04

8.  The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis.

Authors:  Hélène Scheer; Caroline de Almeida; Emilie Ferrier; Quentin Simonnot; Laure Poirier; David Pflieger; François M Sement; Sandrine Koechler; Christina Piermaria; Paweł Krawczyk; Seweryn Mroczek; Johana Chicher; Lauriane Kuhn; Andrzej Dziembowski; Philippe Hammann; Hélène Zuber; Dominique Gagliardi
Journal:  Nat Commun       Date:  2021-02-26       Impact factor: 14.919

Review 9.  Catalytic activities, molecular connections, and biological functions of plant RNA exosome complexes.

Authors:  Heike Lange; Dominique Gagliardi
Journal:  Plant Cell       Date:  2022-03-04       Impact factor: 11.277

Review 10.  mRNA Metabolism in Cardiac Development and Disease: Life After Transcription.

Authors:  Chen Gao; Yibin Wang
Journal:  Physiol Rev       Date:  2019-11-21       Impact factor: 37.312

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