Literature DB >> 16051491

LSm proteins form heptameric rings that bind to RNA via repeating motifs.

Permanan Khusial1, Robert Plaag, Gary W Zieve.   

Abstract

Members of the LSm family of proteins share the Sm fold--a closed barrel comprising five anti-parallel beta strands with an alpha helix stacked on the top. The fold forms a subunit of hexameric or heptameric rings of approximately 7nm in diameter. Interactions between neighboring subunits center on an anti-parallel interaction of the fourth and fifth beta strands. In the lumen of the ring, the subunits have the same spacing as nucleotides in RNA, enabling the rings to bind to single-stranded RNA via a repeating motif. Eubacteria and archaea build homohexamers and homoheptamers, respectively, whereas eukaryotes use >18 LSm paralogs to build at least six different heteroheptameric rings. The four different rings in the nucleus that permanently bind small nuclear RNAs and function in pre-mRNA maturation are called Sm rings. The two different rings that transiently bind to RNAs and, thereby, assist in the degradation of mRNA in the cytoplasm and the maturation of a wide spectrum of RNAs in the nucleus are called LSm rings.

Mesh:

Substances:

Year:  2005        PMID: 16051491     DOI: 10.1016/j.tibs.2005.07.006

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  51 in total

1.  Protein subunit interfaces: A statistical analysis of hot spots in Sm proteins.

Authors:  Srđan D Stojanović; Božidarka L Zarić; Snežana D Zarić
Journal:  J Mol Model       Date:  2010-07-23       Impact factor: 1.810

2.  Functional organization of the Sm core in the crystal structure of human U1 snRNP.

Authors:  Gert Weber; Simon Trowitzsch; Berthold Kastner; Reinhard Lührmann; Markus C Wahl
Journal:  EMBO J       Date:  2010-11-26       Impact factor: 11.598

3.  Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex.

Authors:  Kan Kobayashi; Izumi Kikuno; Kazushige Kuroha; Kazuki Saito; Koichi Ito; Ryuichiro Ishitani; Toshifumi Inada; Osamu Nureki
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

4.  Hfqs in Bacillus anthracis: Role of protein sequence variation in the structure and function of proteins in the Hfq family.

Authors:  Catherine Vrentas; Rodolfo Ghirlando; Andrea Keefer; Zonglin Hu; Aurelie Tomczak; Apostolos G Gittis; Athulaprabha Murthi; David N Garboczi; Susan Gottesman; Stephen H Leppla
Journal:  Protein Sci       Date:  2015-08-30       Impact factor: 6.725

Review 5.  The biogenesis and regulation of telomerase holoenzymes.

Authors:  Kathleen Collins
Journal:  Nat Rev Mol Cell Biol       Date:  2006-07       Impact factor: 94.444

Review 6.  The building blocks and motifs of RNA architecture.

Authors:  Neocles B Leontis; Aurelie Lescoute; Eric Westhof
Journal:  Curr Opin Struct Biol       Date:  2006-05-19       Impact factor: 6.809

7.  Sm core variation in spliceosomal small nuclear ribonucleoproteins from Trypanosoma brucei.

Authors:  Pingping Wang; Zsofia Palfi; Christian Preusser; Stephan Lücke; William S Lane; Christian Kambach; Albrecht Bindereif
Journal:  EMBO J       Date:  2006-09-14       Impact factor: 11.598

Review 8.  Evolutionary diversification of the Sm family of RNA-associated proteins.

Authors:  Douglas G Scofield; Michael Lynch
Journal:  Mol Biol Evol       Date:  2008-08-07       Impact factor: 16.240

9.  Crystal structure of human Edc3 and its functional implications.

Authors:  Sharon H M Ling; Carolyn J Decker; Martin A Walsh; Meipei She; Roy Parker; Haiwei Song
Journal:  Mol Cell Biol       Date:  2008-08-04       Impact factor: 4.272

10.  3'-cyclic phosphorylation of U6 snRNA leads to recruitment of recycling factor p110 through LSm proteins.

Authors:  Konstantin Licht; Jan Medenbach; Reinhard Lührmann; Christian Kambach; Albrecht Bindereif
Journal:  RNA       Date:  2008-06-20       Impact factor: 4.942

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.