Literature DB >> 18560045

Exponential sensitivity of noise-driven switching in genetic networks.

Pankaj Mehta1, Ranjan Mukhopadhyay, Ned S Wingreen.   

Abstract

There is increasing experimental evidence that cells can utilize biochemical noise to switch probabilistically between distinct gene-expression states. In this paper, we demonstrate that such noise-driven switching is dominated by tails of probability distributions and is therefore exponentially sensitive to changes in physiological parameters such as transcription and translation rates. Exponential sensitivity limits the robustness of noise-driven switching, suggesting cells may use other mechanisms in order to switch reliably. We discuss our results in the context of competence in the bacterium Bacillus subtilis.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18560045      PMCID: PMC5746052          DOI: 10.1088/1478-3975/5/2/026005

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  39 in total

1.  Epigenetics as a first exit problem.

Authors:  E Aurell; K Sneppen
Journal:  Phys Rev Lett       Date:  2002-01-08       Impact factor: 9.161

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  Optimal path to epigenetic switching.

Authors:  David Marin Roma; Ruadhan A O'Flanagan; Andrei E Ruckenstein; Anirvan M Sengupta; Ranjan Mukhopadhyay
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-01-11

4.  Phenotypic diversity, population growth, and information in fluctuating environments.

Authors:  Edo Kussell; Stanislas Leibler
Journal:  Science       Date:  2005-08-25       Impact factor: 47.728

5.  Absolute rate theories of epigenetic stability.

Authors:  Aleksandra M Walczak; José N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-16       Impact factor: 11.205

6.  Molecular level stochastic model for competence cycles in Bacillus subtilis.

Authors:  Daniel Schultz; Eshel Ben Jacob; José N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-25       Impact factor: 11.205

7.  Reaction coordinates for the flipping of genetic switches.

Authors:  Marco J Morelli; Sorin Tanase-Nicola; Rosalind J Allen; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2008-01-25       Impact factor: 4.033

8.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

Review 9.  Controlling competence in Bacillus subtilis: shared use of regulators.

Authors:  Leendert W Hamoen; Gerard Venema; Oscar P Kuipers
Journal:  Microbiology (Reading)       Date:  2003-01       Impact factor: 2.777

10.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

View more
  22 in total

1.  Counter-intuitive stochastic behavior of simple gene circuits with negative feedback.

Authors:  Tatiana T Marquez-Lago; Jörg Stelling
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Abduction and asylum in the lives of transcription factors.

Authors:  Anat Burger; Aleksandra M Walczak; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

3.  Kinetics of genetic switching into the state of bacterial competence.

Authors:  Madeleine Leisner; Jan-Timm Kuhr; Joachim O Rädler; Erwin Frey; Berenike Maier
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

4.  Modeling the effect of transcriptional noise on switching in gene networks in a genetic bistable switch.

Authors:  Srabanti Chaudhury
Journal:  J Biol Phys       Date:  2015-03-01       Impact factor: 1.365

5.  Cellular reprogramming dynamics follow a simple one-dimensional reaction coordinate.

Authors:  Sai Teja Pusuluri; Alex H Lang; Pankaj Mehta; Horacio Castillo
Journal:  Phys Biol       Date:  2017-10-04       Impact factor: 2.583

Review 6.  Cellular decision making and biological noise: from microbes to mammals.

Authors:  Gábor Balázsi; Alexander van Oudenaarden; James J Collins
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

Review 7.  Decision making in living cells: lessons from a simple system.

Authors:  Ido Golding
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

8.  Cellular reprogramming dynamics follow a simple 1D reaction coordinate.

Authors:  Sai Teja Pusuluri; Alex H Lang; Pankaj Mehta; Horacio E Castillo
Journal:  Phys Biol       Date:  2017-12-06       Impact factor: 2.583

9.  Global view of bionetwork dynamics: adaptive landscape.

Authors:  Ping Ao
Journal:  J Genet Genomics       Date:  2009-02       Impact factor: 4.275

10.  Functional tunability of biological circuits from additional toggle switches.

Authors:  Changhong Shi; Tianshou Zhou; Zhanjiang Yuan
Journal:  IET Syst Biol       Date:  2013-10       Impact factor: 1.615

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.