Literature DB >> 21414483

Cellular decision making and biological noise: from microbes to mammals.

Gábor Balázsi1, Alexander van Oudenaarden, James J Collins.   

Abstract

Cellular decision making is the process whereby cells assume different, functionally important and heritable fates without an associated genetic or environmental difference. Such stochastic cell fate decisions generate nongenetic cellular diversity, which may be critical for metazoan development as well as optimized microbial resource utilization and survival in a fluctuating, frequently stressful environment. Here, we review several examples of cellular decision making from viruses, bacteria, yeast, lower metazoans, and mammals, highlighting the role of regulatory network structure and molecular noise. We propose that cellular decision making is one of at least three key processes underlying development at various scales of biological organization.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Year:  2011        PMID: 21414483      PMCID: PMC3068611          DOI: 10.1016/j.cell.2011.01.030

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  93 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

Review 3.  Quorum sensing: cell-to-cell communication in bacteria.

Authors:  Christopher M Waters; Bonnie L Bassler
Journal:  Annu Rev Cell Dev Biol       Date:  2005       Impact factor: 13.827

4.  Phenotypic diversity, population growth, and information in fluctuating environments.

Authors:  Edo Kussell; Stanislas Leibler
Journal:  Science       Date:  2005-08-25       Impact factor: 47.728

5.  Absolute rate theories of epigenetic stability.

Authors:  Aleksandra M Walczak; José N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-16       Impact factor: 11.205

6.  The effects of molecular noise and size control on variability in the budding yeast cell cycle.

Authors:  Stefano Di Talia; Jan M Skotheim; James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2007-08-23       Impact factor: 49.962

7.  Decision making at a subcellular level determines the outcome of bacteriophage infection.

Authors:  Lanying Zeng; Samuel O Skinner; Chenghang Zong; Jean Sippy; Michael Feiss; Ido Golding
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

8.  Specific binding of the lambda phage repressor to lambda DNA.

Authors:  M Ptashne
Journal:  Nature       Date:  1967-04-15       Impact factor: 49.962

9.  The genetical evolution of social behaviour. I.

Authors:  W D Hamilton
Journal:  J Theor Biol       Date:  1964-07       Impact factor: 2.691

10.  Direct cell reprogramming is a stochastic process amenable to acceleration.

Authors:  Jacob Hanna; Krishanu Saha; Bernardo Pando; Jeroen van Zon; Christopher J Lengner; Menno P Creyghton; Alexander van Oudenaarden; Rudolf Jaenisch
Journal:  Nature       Date:  2009-11-08       Impact factor: 49.962

View more
  384 in total

Review 1.  Heterogeneous bacterial persisters and engineering approaches to eliminate them.

Authors:  Kyle R Allison; Mark P Brynildsen; James J Collins
Journal:  Curr Opin Microbiol       Date:  2011-09-19       Impact factor: 7.934

2.  A common repressor pool results in indeterminacy of extrinsic noise.

Authors:  Michail Stamatakis; Rhys M Adams; Gábor Balázsi
Journal:  Chaos       Date:  2011-12       Impact factor: 3.642

3.  Tunable synthetic phenotypic diversification on Waddington's landscape through autonomous signaling.

Authors:  Ryoji Sekine; Masayuki Yamamura; Shotaro Ayukawa; Kana Ishimatsu; Satoru Akama; Masahiro Takinoue; Masami Hagiya; Daisuke Kiga
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

4.  Emergent bistability: effects of additive and multiplicative noise.

Authors:  S Ghosh; S Banerjee; I Bose
Journal:  Eur Phys J E Soft Matter       Date:  2012-02-23       Impact factor: 1.890

Review 5.  Transcription goes digital.

Authors:  Timothée Lionnet; Robert H Singer
Journal:  EMBO Rep       Date:  2012-04-02       Impact factor: 8.807

6.  Regulation of oscillation dynamics in biochemical systems with dual negative feedback loops.

Authors:  Lan K Nguyen
Journal:  J R Soc Interface       Date:  2012-03-14       Impact factor: 4.118

Review 7.  Dynamical systems approach to endothelial heterogeneity.

Authors:  Erzsébet Ravasz Regan; William C Aird
Journal:  Circ Res       Date:  2012-06-22       Impact factor: 17.367

Review 8.  How Outcome Uncertainty Mediates Attention, Learning, and Decision-Making.

Authors:  Ilya E Monosov
Journal:  Trends Neurosci       Date:  2020-07-28       Impact factor: 13.837

9.  Robust, tunable genetic memory from protein sequestration combined with positive feedback.

Authors:  Tatenda Shopera; William R Henson; Andrew Ng; Young Je Lee; Kenneth Ng; Tae Seok Moon
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

10.  Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells.

Authors:  Yu Lu; Yuin-Han Loh; Hu Li; Marcella Cesana; Scott B Ficarro; Jignesh R Parikh; Nathan Salomonis; Cheng-Xu Delon Toh; Stelios T Andreadis; C John Luckey; James J Collins; George Q Daley; Jarrod A Marto
Journal:  Cell Stem Cell       Date:  2014-05-08       Impact factor: 24.633

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.