Literature DB >> 18511566

Thiolate-bridged dinuclear iron(tris-carbonyl)-nickel complexes relevant to the active site of [NiFe] hydrogenase.

Yasuhiro Ohki1, Kazunari Yasumura, Katsuaki Kuge, Soichiro Tanino, Masaru Ando, Zilong Li, Kazuyuki Tatsumi.   

Abstract

The reaction of NiBr(2)(EtOH)(4) with a 1:2-3 mixture of FeBr(2)(CO)(4) and Na(SPh) generated a linear trinuclear Fe-Ni-Fe cluster (CO)(3)Fe(mu-SPh)(3)Ni(mu-SPh)(3)Fe(CO)(3), 1, whereas the analogous reaction system FeBr(2)(CO)(4)/Na(S(t)Bu)/NiBr(2)(EtOH)(4) (1:2-3:1) gave rise to a linear tetranuclear Fe-Ni-Ni-Fe cluster [(CO)(3)Fe(mu-S(t)Bu)(3)Ni(mu-Br)](2), 2. By using this tetranuclear cluster 2 as the precursor, we have developed a new synthetic route to a series of thiolate-bridged dinuclear Fe(CO)(3)-Ni complexes, the structures of which mimic [NiFe] hydrogenase active sites. The reactions of 2 with SC(NMe(2))(2) (tmtu), Na{S(CH(2))(2)SMe} and ortho-NaS(C(6)H(4))SR (R = Me, (t)Bu) led to isolation of (CO)(3)Fe(mu-S(t)Bu)(3)NiBr(tmtu), 3, (CO)(3)Fe(S(t)Bu)(mu-S(t)Bu)(2)Ni{S(CH(2))(2)SMe}, 4, and (CO)(3)Fe(S(t)Bu)(mu-S(t)Bu)(2)Ni{S(C(6)H(4))SR}, 5a (R = Me) and 5b (R = (t)Bu), respectively. On the other hand, treatment of 2 with 2-methylthio-phenolate (ortho-O(C(6)H(4))SMe) in methanol resulted in (CO)(3)Fe(mu-S(t)Bu)(3)Ni(MeOH){O(C(6)H(4))SMe}, 6a. The methanol molecule bound to Ni is labile and is readily released under reduced pressure to afford (CO)(3)Fe(S(t)Bu)(mu-S(t)Bu)(2)Ni{O(C(6)H(4))SMe}, 6b, and the coordination geometry of nickel changes from octahedral to square planar. Likewise, the reaction of 2 with NaOAc in methanol followed by crystallization from THF gave (CO)(3)Fe(mu-S(t)Bu)(3)Ni(THF)(OAc), 7. The dinuclear complexes, 3-7, are thermally unstable, and a key to their successful isolation is to carry out the reactions and manipulations at -40 degrees C.

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Year:  2008        PMID: 18511566      PMCID: PMC2409409          DOI: 10.1073/pnas.0800538105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Density functional calculations for modeling the active site of nickel-iron hydrogenases. 2. Predictions for the unready and ready States and the corresponding activation processes.

Authors:  Christian Stadler; Antonio L de Lacey; Yael Montet; Anne Volbeda; Juan C Fontecilla-Camps; Jose C Conesa; Víctor M Fernández
Journal:  Inorg Chem       Date:  2002-08-26       Impact factor: 5.165

2.  Dithiolato-bridged dinuclear iron-nickel complexes [Fe(CO)2(CN)2(mu-SCH2CH2CH2S)Ni(S2CNR2)]- modeling the active site of [NiFe] hydrogenase.

Authors:  Zilong Li; Yasuhiro Ohki; Kazuyuki Tatsumi
Journal:  J Am Chem Soc       Date:  2005-06-29       Impact factor: 15.419

Review 3.  Activation and inactivation of hydrogenase function and the catalytic cycle: spectroelectrochemical studies.

Authors:  Antonio L De Lacey; Víctor M Fernandez; Marc Rousset; Richard Cammack
Journal:  Chem Rev       Date:  2007-08-23       Impact factor: 60.622

4.  Gas access to the active site of Ni-Fe hydrogenases probed by X-ray crystallography and molecular dynamics.

Authors:  Y Montet; P Amara; A Volbeda; X Vernede; E C Hatchikian; M J Field; M Frey; J C Fontecilla-Camps
Journal:  Nat Struct Biol       Date:  1997-07

5.  Pathways of H2 toward the active site of [NiFe]-hydrogenase.

Authors:  Vitor H Teixeira; António M Baptista; Cláudio M Soares
Journal:  Biophys J       Date:  2006-05-26       Impact factor: 4.033

6.  Modulation of the electronic structure and the Ni-Fe distance in heterobimetallic models for the active site in [NiFe]hydrogenase.

Authors:  Wenfeng Zhu; Andrew C Marr; Qiang Wang; Frank Neese; Douglas J E Spencer; Alexander J Blake; Paul A Cooke; Claire Wilson; Martin Schröder
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-13       Impact factor: 11.205

Review 7.  A third type of hydrogenase catalyzing H2 activation.

Authors:  Seigo Shima; Rudolf K Thauer
Journal:  Chem Rec       Date:  2007       Impact factor: 6.771

8.  Structural and oxidation-state changes at its nonstandard Ni-Fe site during activation of the NAD-reducing hydrogenase from Ralstonia eutropha detected by X-ray absorption, EPR, and FTIR spectroscopy.

Authors:  Tanja Burgdorf; Simone Löscher; Peter Liebisch; Eddy Van der Linden; Marcus Galander; Friedhelm Lendzian; Wolfram Meyer-Klaucke; Simon P J Albracht; Bärbel Friedrich; Holger Dau; Michael Haumann
Journal:  J Am Chem Soc       Date:  2005-01-19       Impact factor: 15.419

9.  A functional hydrogenase model: reversible interconversion of H2 and H2O by a hydroxo/sulfido-bridged dinuclear ruthenium-germanium complex.

Authors:  Tsuyoshi Matsumoto; Yukiko Nakaya; Naohisa Itakura; Kazuyuki Tatsumi
Journal:  J Am Chem Soc       Date:  2008-02-01       Impact factor: 15.419

10.  A dinuclear Ni(mu-H)Ru complex derived from H2.

Authors:  Seiji Ogo; Ryota Kabe; Keiji Uehara; Bunsho Kure; Takashi Nishimura; Saija C Menon; Ryosuke Harada; Shunichi Fukuzumi; Yoshiki Higuchi; Takashi Ohhara; Taro Tamada; Ryota Kuroki
Journal:  Science       Date:  2007-04-27       Impact factor: 47.728

View more
  9 in total

1.  Hydride-containing models for the active site of the nickel-iron hydrogenases.

Authors:  Bryan E Barton; Thomas B Rauchfuss
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

2.  Artificial hydrogenases.

Authors:  Bryan E Barton; Matthew T Olsen; Thomas B Rauchfuss
Journal:  Curr Opin Biotechnol       Date:  2010-03-30       Impact factor: 9.740

3.  A model for the CO-inhibited form of [NiFe] hydrogenase: synthesis of CO3Fe(micro-StBu)3Ni{SC6H3-2,6-(mesityl)2} and reversible CO addition at the Ni site.

Authors:  Yasuhiro Ohki; Kazunari Yasumura; Masaru Ando; Satoko Shimokata; Kazuyuki Tatsumi
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-10       Impact factor: 11.205

4.  Influence of Benzannulation on Metal Coordination Geometries: Synthesis and Structural Characterization of Tris(2-mercapto-1-methylbenzimidazolyl)hydroborato Cadmium Bromide, {[TmMeBenz]Cd(μ-Br)}2.

Authors:  Joshua H Palmer; Gerard Parkin
Journal:  J Mol Struct       Date:  2015-02-05       Impact factor: 3.196

Review 5.  Small molecule mimics of hydrogenases: hydrides and redox.

Authors:  Frédéric Gloaguen; Thomas B Rauchfuss
Journal:  Chem Soc Rev       Date:  2008-10-31       Impact factor: 54.564

6.  Coordination chemistry of [HFe(CN)(2)(CO)(3)](-) and its derivatives: toward a model for the iron subsite of the [NiFe]-hydrogenases.

Authors:  C Matthew Whaley; Thomas B Rauchfuss; Scott R Wilson
Journal:  Inorg Chem       Date:  2009-05-18       Impact factor: 5.165

7.  Biomimetic chemistry of iron, nickel, molybdenum, and tungsten in sulfur-ligated protein sites.

Authors:  Stanislav Groysman; R H Holm
Journal:  Biochemistry       Date:  2009-03-24       Impact factor: 3.162

8.  Nickel-iron dithiolato hydrides relevant to the [NiFe]-hydrogenase active site.

Authors:  Bryan E Barton; C Matthew Whaley; Thomas B Rauchfuss; Danielle L Gray
Journal:  J Am Chem Soc       Date:  2009-05-27       Impact factor: 15.419

9.  Ferrous Carbonyl Dithiolates as Precursors to FeFe, FeCo, and FeMn Carbonyl Dithiolates.

Authors:  Maria E Carroll; Jinzhu Chen; Danielle E Gray; James C Lansing; Thomas B Rauchfuss; David Schilter; Phillip I Volkers; Scott R Wilson
Journal:  Organometallics       Date:  2014-02-03       Impact factor: 3.876

  9 in total

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