Literature DB >> 16352727

Modulation of the electronic structure and the Ni-Fe distance in heterobimetallic models for the active site in [NiFe]hydrogenase.

Wenfeng Zhu1, Andrew C Marr, Qiang Wang, Frank Neese, Douglas J E Spencer, Alexander J Blake, Paul A Cooke, Claire Wilson, Martin Schröder.   

Abstract

Reaction of the mononuclear Ni(II) thiolate complexes [Ni(L)] [L, L(1), H2L(1), bis(2-mercaptoethyl)-1,2-dimercaptoethane; L(2), H2L(2), N,N'-dimethyl-N,N'-bis(2-mercaptoethyl)-bis(aminoethyl)sulfide] with [FeCp(CO)2I] gives the dithiolate-bridged heterobimetallic species, [Ni(L(1))FeCp(CO)]PF6, 1, and [Ni(L(2))FeCp]I, 2, respectively. Binding of a Fe(CO)3 fragment via reaction of square-planar [Ni(pdt)(dppe)] (dppe, 1,2-diphenylphosphinoethane; pdt(2-), 1,3-propanedithiolate) with Fe3(CO)12 or [Fe(CO)3(BDA)] (BDA, benzylidene acetone) affords diamagnetic [(dppe)Ni(mu-pdt)Fe(CO)3], 3, in which the Ni(II) center is bound tetrahedrally to two thiolate S-donors and to two P-donors. The complex [(dppe)Ni(mu-pdt)Fe(CO)3], 3, reacts in solution via rearrangement to afford [(OC)Ni(mu-dppe)(mu-pdt)Fe(CO)2], 4, in which one P-donor of dppe is bound to Ni and the other to Fe, and a CO ligand has transferred from Fe to Ni. Additionally, the syntheses of 3 and 4 afford the side products [(dppe)Ni(CO)2] and [(OC)3Fe(pdt)Fe(CO)3] together with the trinuclear species [(dppe)(CO)Fe(mu-CO)(mu-pdt)Fe(mu-pdt)Fe(CO)3], 5. Reaction of [Ni(pdt)(dppe)] with [FeCp(CO)2I] in CH2Cl2 affords two products [(dppe)Ni(mu-pdt)FeCp(CO)]PF6, 6, and [(dppe)Ni(pdt)(mu-I)Ni(dppe)]PF6, 7. The complexes 2, 3, and 4 show Ni-Fe distances of 2.539(4), 2.4666(6), and 2.4777(7) A, respectively, with relatively acute dihedral angles of 79.5-81.8 degrees for the Ni-S2-Fe bridge, thus mimicking the shortened Ni...Fe distance (2.5 A) and the acute dihedral angle of the Ni-S2-Fe moiety observed in certain active forms of [NiFe]hydrogenase. The role of direct Ni-Fe bonding in these complexes is discussed and linked to electronic structure calculations on [(dppe)Ni(pdt)Fe(CO)3], 3, which confirm the presence of a bent Ni(d(z2))-Fe(d(z2)) sigma-bond in a singlet ground state.

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Year:  2005        PMID: 16352727      PMCID: PMC1317917          DOI: 10.1073/pnas.0505779102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Relativistic DFT calculations of the paramagnetic intermediates of [NiFe] hydrogenase. Implications for the enzymatic mechanism.

Authors:  M Stein; E van Lenthe; E J Baerends; W Lubitz
Journal:  J Am Chem Soc       Date:  2001-06-20       Impact factor: 15.419

2.  Dithiolato-bridged dinuclear iron-nickel complexes [Fe(CO)2(CN)2(mu-SCH2CH2CH2S)Ni(S2CNR2)]- modeling the active site of [NiFe] hydrogenase.

Authors:  Zilong Li; Yasuhiro Ohki; Kazuyuki Tatsumi
Journal:  J Am Chem Soc       Date:  2005-06-29       Impact factor: 15.419

3.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

4.  Density-functional approximation for the correlation energy of the inhomogeneous electron gas.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-06-15

5.  Structural differences between the ready and unready oxidized states of [NiFe] hydrogenases.

Authors:  Anne Volbeda; Lydie Martin; Christine Cavazza; Michaël Matho; Bart W Faber; Winfried Roseboom; Simon P J Albracht; Elsa Garcin; Marc Rousset; Juan C Fontecilla-Camps
Journal:  J Biol Inorg Chem       Date:  2005-04-01       Impact factor: 3.358

6.  [NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774: gene sequencing, three-dimensional structure determination and refinement at 1.8 A and modelling studies of its interaction with the tetrahaem cytochrome c3.

Authors:  P M Matias; C M Soares; L M Saraiva; R Coelho; J Morais; J Le Gall; M A Carrondo
Journal:  J Biol Inorg Chem       Date:  2001-01       Impact factor: 3.358

7.  Spin-Dependent Delocalization in Three Isostructural Complexes [LFeNiFeL](2+/3+/4+) (L = 1,4,7-(4-tert-Butyl-2-mercaptobenzyl)-1,4,7-triazacyclononane).

Authors:  Thorsten Glaser; Frank Kesting; Thomas Beissel; Eckhard Bill; Thomas Weyhermüller; Wolfram Meyer-Klaucke; Karl Wieghardt
Journal:  Inorg Chem       Date:  1999-02-22       Impact factor: 5.165

8.  The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center.

Authors:  E Garcin; X Vernede; E C Hatchikian; A Volbeda; M Frey; J C Fontecilla-Camps
Journal:  Structure       Date:  1999-05       Impact factor: 5.006

9.  Reactions of H2, CO, and O2 with active [NiFe]-hydrogenase from Allochromatium vinosum. A stopped-flow infrared study.

Authors:  Simon J George; Sergei Kurkin; Roger N F Thorneley; Simon P J Albracht
Journal:  Biochemistry       Date:  2004-06-01       Impact factor: 3.162

10.  [3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis.

Authors:  M Rousset; Y Montet; B Guigliarelli; N Forget; M Asso; P Bertrand; J C Fontecilla-Camps; E C Hatchikian
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-29       Impact factor: 11.205

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  24 in total

1.  Hydride-containing models for the active site of the nickel-iron hydrogenases.

Authors:  Bryan E Barton; Thomas B Rauchfuss
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

2.  Mixed-valence nickel-iron dithiolate models of the [NiFe]-hydrogenase active site.

Authors:  David Schilter; Mark J Nilges; Mrinmoy Chakrabarti; Paul A Lindahl; Thomas B Rauchfuss; Matthias Stein
Journal:  Inorg Chem       Date:  2012-02-03       Impact factor: 5.165

Review 3.  Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides.

Authors:  David Schilter; James M Camara; Mioy T Huynh; Sharon Hammes-Schiffer; Thomas B Rauchfuss
Journal:  Chem Rev       Date:  2016-06-29       Impact factor: 60.622

4.  N-Substituted Derivatives of the Azadithiolate Cofactor from the [FeFe] Hydrogenases: Stability and Complexation.

Authors:  Raja Angamuthu; Chi-Shian Chen; Tyler R Cochrane; Danielle L Gray; David Schilter; Olbelina A Ulloa; Thomas B Rauchfuss
Journal:  Inorg Chem       Date:  2015-05-22       Impact factor: 5.165

5.  Mechanism of H2 Production by Models for the [NiFe]-Hydrogenases: Role of Reduced Hydrides.

Authors:  Olbelina A Ulloa; Mioy T Huynh; Casseday P Richers; Jeffery A Bertke; Mark J Nilges; Sharon Hammes-Schiffer; Thomas B Rauchfuss
Journal:  J Am Chem Soc       Date:  2016-07-18       Impact factor: 15.419

6.  Synthetic Models for Nickel-Iron Hydrogenase Featuring Redox-Active Ligands.

Authors:  David Schilter; Danielle L Gray; Amy L Fuller; Thomas B Rauchfuss
Journal:  Aust J Chem       Date:  2017-01-11       Impact factor: 1.321

Review 7.  Metal-metal bonds in biology.

Authors:  Paul A Lindahl
Journal:  J Inorg Biochem       Date:  2011-08-26       Impact factor: 4.155

8.  Active-site models for the nickel-iron hydrogenases: effects of ligands on reactivity and catalytic properties.

Authors:  Maria E Carroll; Bryan E Barton; Danielle L Gray; Amanda E Mack; Thomas B Rauchfuss
Journal:  Inorg Chem       Date:  2011-08-25       Impact factor: 5.165

9.  Synthetic Designs and Structural Investigations of Biomimetic Ni-Fe Thiolates.

Authors:  Debashis Basu; T Spencer Bailey; Noémie Lalaoui; Casseday P Richers; Toby J Woods; Thomas B Rauchfuss; Federica Arrigoni; Giuseppe Zampella
Journal:  Inorg Chem       Date:  2019-02-01       Impact factor: 5.165

10.  Hyperfine interactions and electron distribution in Fe(II)Fe (I) and Fe (I)Fe (I) models for the active site of the [FeFe] hydrogenases: Mössbauer spectroscopy studies of low-spin Fe(I.).

Authors:  Sebastian A Stoian; Chung-Hung Hsieh; Michael L Singleton; Andrea F Casuras; Marcetta Y Darensbourg; Kelsey McNeely; Kurt Sweely; Codrina V Popescu
Journal:  J Biol Inorg Chem       Date:  2013-05-23       Impact factor: 3.358

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