Literature DB >> 21939244

ATP-stimulated, DNA-mediated redox signaling by XPD, a DNA repair and transcription helicase.

Timothy P Mui1, Jill O Fuss, Justin P Ishida, John A Tainer, Jacqueline K Barton.   

Abstract

Using DNA-modified electrodes, we show DNA-mediated signaling by XPD, a helicase that contains a [4Fe-4S] cluster and is critical for nucleotide excision repair and transcription. The DNA-mediated redox signal resembles that of base excision repair proteins, with a DNA-bound redox potential of ~80 mV versus NHE. Significantly, this signal increases with ATP hydrolysis. Moreover, the redox signal is substrate-dependent, reports on the DNA conformational changes associated with enzymatic function, and may reflect a general biological role for DNA charge transport.

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Year:  2011        PMID: 21939244      PMCID: PMC3234108          DOI: 10.1021/ja207222t

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

1.  Insights into eukaryotic DNA priming from the structure and functional interactions of the 4Fe-4S cluster domain of human DNA primase.

Authors:  Sivaraja Vaithiyalingam; Eric M Warren; Brandt F Eichman; Walter J Chazin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

2.  Redox signaling between DNA repair proteins for efficient lesion detection.

Authors:  Amie K Boal; Joseph C Genereux; Pamela A Sontz; Jeffrey A Gralnick; Dianne K Newman; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-31       Impact factor: 11.205

3.  XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations.

Authors:  Li Fan; Jill O Fuss; Quen J Cheng; Andrew S Arvai; Michal Hammel; Victoria A Roberts; Priscilla K Cooper; John A Tainer
Journal:  Cell       Date:  2008-05-30       Impact factor: 41.582

Review 4.  XPB and XPD helicases in TFIIH orchestrate DNA duplex opening and damage verification to coordinate repair with transcription and cell cycle via CAK kinase.

Authors:  Jill O Fuss; John A Tainer
Journal:  DNA Repair (Amst)       Date:  2011-05-14

Review 5.  Mechanisms for DNA charge transport.

Authors:  Joseph C Genereux; Jacqueline K Barton
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

6.  Mutants of the base excision repair glycosylase, endonuclease III: DNA charge transport as a first step in lesion detection.

Authors:  Christine A Romano; Pamela A Sontz; Jacqueline K Barton
Journal:  Biochemistry       Date:  2011-06-09       Impact factor: 3.162

7.  DNA charge transport over 34 nm.

Authors:  Jason D Slinker; Natalie B Muren; Sara E Renfrew; Jacqueline K Barton
Journal:  Nat Chem       Date:  2011-01-30       Impact factor: 24.427

Review 8.  Welcome the family of FANCJ-like helicases to the block of genome stability maintenance proteins.

Authors:  Y Wu; A N Suhasini; R M Brosh
Journal:  Cell Mol Life Sci       Date:  2009-04       Impact factor: 9.261

9.  Structure of the DNA repair helicase XPD.

Authors:  Huanting Liu; Jana Rudolf; Kenneth A Johnson; Stephen A McMahon; Muse Oke; Lester Carter; Anne-Marie McRobbie; Sara E Brown; James H Naismith; Malcolm F White
Journal:  Cell       Date:  2008-05-30       Impact factor: 41.582

10.  DNA-mediated charge transport in redox sensing and signaling.

Authors:  Joseph C Genereux; Amie K Boal; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2010-01-27       Impact factor: 15.419

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  34 in total

1.  DNA charge transport as a first step in coordinating the detection of lesions by repair proteins.

Authors:  Pamela A Sontz; Timothy P Mui; Jill O Fuss; John A Tainer; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

2.  Redox Chemistry in the Genome: Emergence of the [4Fe4S] Cofactor in Repair and Replication.

Authors:  Jacqueline K Barton; Rebekah M B Silva; Elizabeth O'Brien
Journal:  Annu Rev Biochem       Date:  2019-06-20       Impact factor: 23.643

Review 3.  Sensing DNA through DNA Charge Transport.

Authors:  Theodore J Zwang; Edmund C M Tse; Jacqueline K Barton
Journal:  ACS Chem Biol       Date:  2018-06-01       Impact factor: 5.100

Review 4.  Emerging critical roles of Fe-S clusters in DNA replication and repair.

Authors:  Jill O Fuss; Chi-Lin Tsai; Justin P Ishida; John A Tainer
Journal:  Biochim Biophys Acta       Date:  2015-02-02

Review 5.  What Combined Measurements From Structures and Imaging Tell Us About DNA Damage Responses.

Authors:  Chris A Brosey; Zamal Ahmed; Susan P Lees-Miller; John A Tainer
Journal:  Methods Enzymol       Date:  2017-05-29       Impact factor: 1.600

6.  Substrate Binding Regulates Redox Signaling in Human DNA Primase.

Authors:  Elizabeth O'Brien; Marilyn E Holt; Lauren E Salay; Walter J Chazin; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2018-11-29       Impact factor: 15.419

7.  Finding a needle in the haystack: recognition of DNA damage by collaboration between DNA repair proteins able to perform DNA charge transport.

Authors:  Robert M Brosh
Journal:  Cell Cycle       Date:  2012-03-15       Impact factor: 4.534

Review 8.  Grip it and rip it: structural mechanisms of DNA helicase substrate binding and unwinding.

Authors:  Basudeb Bhattacharyya; James L Keck
Journal:  Protein Sci       Date:  2014-08-22       Impact factor: 6.725

Review 9.  Two steps forward, one step back: determining XPD helicase mechanism by single-molecule fluorescence and high-resolution optical tweezers.

Authors:  Maria Spies
Journal:  DNA Repair (Amst)       Date:  2014-02-21

10.  ARCH domain of XPD, an anchoring platform for CAK that conditions TFIIH DNA repair and transcription activities.

Authors:  Wassim Abdulrahman; Izarn Iltis; Laura Radu; Cathy Braun; Anne Maglott-Roth; Christophe Giraudon; Jean-Marc Egly; Arnaud Poterszman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

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