Literature DB >> 22308316

Subunit architecture of general transcription factor TFIIH.

Brian J Gibbons1, Edward J Brignole, Maia Azubel, Kenji Murakami, Neil R Voss, David A Bushnell, Francisco J Asturias, Roger D Kornberg.   

Abstract

Structures of complete 10-subunit yeast TFIIH and of a nested set of subcomplexes, containing 5, 6, and 7 subunits, have been determined by electron microscopy (EM) and 3D reconstruction. Consistency among all the structures establishes the location of the "minimal core" subunits (Ssl1, Tfb1, Tfb2, Tfb4, and Tfb5), and additional densities can be specifically attributed to Rad3, Ssl2, and the TFIIK trimer. These results can be further interpreted by placement of previous X-ray structures into the additional densities to give a preliminary picture of the RNA polymerase II preinitiation complex. In this picture, the key catalytic components of TFIIH, the Ssl2 ATPase/helicase and the Kin28 protein kinase are in proximity to their targets, downstream promoter DNA and the RNA polymerase C-terminal domain.

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Year:  2012        PMID: 22308316      PMCID: PMC3277522          DOI: 10.1073/pnas.1105266109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  64 in total

1.  A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.

Authors:  Masahiko Okuda; Aki Tanaka; Yoko Arai; Manami Satoh; Hideyasu Okamura; Aritaka Nagadoi; Fumio Hanaoka; Yoshiaki Ohkuma; Yoshifumi Nishimura
Journal:  J Biol Chem       Date:  2004-09-22       Impact factor: 5.157

2.  Fourier shell correlation threshold criteria.

Authors:  Marin van Heel; Michael Schatz
Journal:  J Struct Biol       Date:  2005-09       Impact factor: 2.867

3.  A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex.

Authors:  Gail Miller; Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2006-07-02       Impact factor: 15.369

4.  Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair.

Authors:  Li Fan; Andrew S Arvai; Priscilla K Cooper; Shigenori Iwai; Fumio Hanaoka; John A Tainer
Journal:  Mol Cell       Date:  2006-04-07       Impact factor: 17.970

5.  TFIIH enzymatic activities in transcription and nucleotide excision repair.

Authors:  Jean-Philippe Lainé; Vincent Mocquet; Jean-Marc Egly
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

6.  Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex.

Authors:  Jesse Eichner; Hung-Ta Chen; Linda Warfield; Steven Hahn
Journal:  EMBO J       Date:  2009-12-24       Impact factor: 11.598

7.  Mediator head module structure and functional interactions.

Authors:  Gang Cai; Tsuyoshi Imasaki; Kentaro Yamada; Francesco Cardelli; Yuichiro Takagi; Francisco J Asturias
Journal:  Nat Struct Mol Biol       Date:  2010-02-14       Impact factor: 15.369

8.  Synthesis and bioconjugation of 2 and 3 nm-diameter gold nanoparticles.

Authors:  Christopher J Ackerson; Pablo D Jadzinsky; Jonathan Z Sexton; David A Bushnell; Roger D Kornberg
Journal:  Bioconjug Chem       Date:  2010-02-17       Impact factor: 4.774

9.  Stimulation of the XPB ATP-dependent helicase by the beta subunit of TFIIE.

Authors:  Yin C Lin; Jay D Gralla
Journal:  Nucleic Acids Res       Date:  2005-05-25       Impact factor: 16.971

10.  The helicase XPD unwinds bubble structures and is not stalled by DNA lesions removed by the nucleotide excision repair pathway.

Authors:  Jana Rudolf; Christophe Rouillon; Ulrich Schwarz-Linek; Malcolm F White
Journal:  Nucleic Acids Res       Date:  2009-11-20       Impact factor: 16.971

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  34 in total

1.  Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation.

Authors:  Kenji Murakami; Brian J Gibbons; Ralph E Davis; Shigeki Nagai; Xin Liu; Philip J J Robinson; Tinghe Wu; Craig D Kaplan; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

Review 2.  TFIIH: when transcription met DNA repair.

Authors:  Emmanuel Compe; Jean-Marc Egly
Journal:  Nat Rev Mol Cell Biol       Date:  2012-05-10       Impact factor: 94.444

3.  Def1 interacts with TFIIH and modulates RNA polymerase II transcription.

Authors:  Nivedita Damodaren; Trevor Van Eeuwen; Joanna Zamel; Enrique Lin-Shiao; Nir Kalisman; Kenji Murakami
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-27       Impact factor: 11.205

Review 4.  Structural insights into transcription initiation by RNA polymerase II.

Authors:  Sebastian Grünberg; Steven Hahn
Journal:  Trends Biochem Sci       Date:  2013-10-11       Impact factor: 13.807

Review 5.  Structural basis of transcription initiation by RNA polymerase II.

Authors:  Sarah Sainsbury; Carrie Bernecky; Patrick Cramer
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-18       Impact factor: 94.444

6.  Formation and fate of a complete 31-protein RNA polymerase II transcription preinitiation complex.

Authors:  Kenji Murakami; Guillermo Calero; Christopher R Brown; Xin Liu; Ralph E Davis; Hinrich Boeger; Roger D Kornberg
Journal:  J Biol Chem       Date:  2013-01-09       Impact factor: 5.157

Review 7.  DNA repair mechanisms and the bypass of DNA damage in Saccharomyces cerevisiae.

Authors:  Serge Boiteux; Sue Jinks-Robertson
Journal:  Genetics       Date:  2013-04       Impact factor: 4.562

8.  Conservation and Divergence in Nucleotide Excision Repair Lesion Recognition.

Authors:  Nicolas Wirth; Jonas Gross; Heide M Roth; Claudia N Buechner; Caroline Kisker; Ingrid Tessmer
Journal:  J Biol Chem       Date:  2016-07-12       Impact factor: 5.157

9.  Tripartite DNA Lesion Recognition and Verification by XPC, TFIIH, and XPA in Nucleotide Excision Repair.

Authors:  Chia-Lung Li; Filip M Golebiowski; Yuki Onishi; Nadine L Samara; Kaoru Sugasawa; Wei Yang
Journal:  Mol Cell       Date:  2015-09-17       Impact factor: 17.970

10.  ARCH domain of XPD, an anchoring platform for CAK that conditions TFIIH DNA repair and transcription activities.

Authors:  Wassim Abdulrahman; Izarn Iltis; Laura Radu; Cathy Braun; Anne Maglott-Roth; Christophe Giraudon; Jean-Marc Egly; Arnaud Poterszman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

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